SimpleSearch - Line and FST details


Line specific information

 
Line ID 152F03
Vector Used pAC161
Line Availability available as T3 set from NASC (N414559)
Segregation Analysis 50:49:48
Confirmed for Hit At3g55290
Parent of DUPLO pair none
Parent of pair(s) 68841, 97270, 97271, 97272, 97273, 97274, 97277, 97278, 97279, 97280, 97282, 97283

Gene hit F25C20

 
Sequence (A. th genome BLAST matches underlined) 
>22-K013139-022-152-F03-8409
NTGATCCATGTAGAATTTCCCGACATGAAGCACTTTACAAATCTGCTCTTTTACGAAATC
AAATCTGTATCTACATGAGTTGATTATCATTCTTATTGTAACCTATGGAATCCTCGTTAT
AGTGAACCACTATGTCTTTAGGTTCACACCATGGCTCCAATGGCTTCAACACCTGCGTTG
CTCCCCCAAAAAAAAAACGAAGGCAAAGATAAGGGAGTTGCAGATAACAAAGGCAAAACC
GCAGGAGGGACATTTTTTCCTTTTGGAATCATAGGGCAAAAAGAAAAACAAAAAGCTTAT
TTAAGGGTAAAAAGCTTGGAAATTGGGAAAGGGGCCTTATTTAAAGGGTAATATGAATAG
TTTGGAAGATAAAAAAAAGAATGGGAAATGAAAAAAAGGGTTATCTCACAGGTGGAGGAT
GGCTCATATGGGTTTCTTGGGGGGGGGGGTTCGAGGGCCAAGGGGGAAGGAGAAGCCAAC
ACCTTATACCATTTTTAAATCCCGGCGGCAAAAAGATATAATTGGATCAATCGGCCAAAG
ACCG
GenBank Accession AL757803 [GenBank]
Graphic View Graphic view of sequence AL757803 of line 152F03
Predicted Position of Insertion Chr1:3907161 - go to primer design
BLAST e Value 1e-25
Hit Clone Code (BAC ID) F25C20
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g55290

 
Sequence (A. th genome BLAST matches underlined) 
>22-K013134-022-152-F03-8409
TTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATCGTAGATATAATTATGCT
GAGTAACCATTTTTGTACAACTATAGGACAGATCTTTCTGTCCAATACCGGAGGAAGCTC
CTGTCACAAAAACCACTTTGTCTTTAAGTGCACACCATGGCTCCAATAGCTTCAACACCT
GCTTTTCTCCCCCAAAAAAAAACCAAAAGACAAAAATGAGGTGATTTCTAATTACAAAAA
CAAAACCCCGGGATTGGCGTTTTTTCCTTTTGGAATCATTTGGCAAAAAAAATAACAGAA
TTCATATTTAAAGGTTAAAAGCTGGGTAATTGGAAAAGGGGCCTAATATAAAGGGTTATA
TGAATAGTTTTGAAAATAAAAAGAAAGATGGGAAAGGAGAGAAAAGGTTATCTCACAGAT
GGAGGATGGCTCATATGGTTTTCTCTGGGGGGGGTGTCCAATGGCCAAGGGGGAAGGGGA
ACCCATTAACATATACCATATTTAATTCCAGGTGCCAAAAAGATATA
GenBank Accession AL757802 [GenBank]
Graphic View Graphic view of gene At3g55290
Predicted Position of Insertion Chr3:20503028 - go to primer design
BLAST e Value 4e-44
Hit Clone Code (BAC ID) T26I12
Hit Gene Code At3g55290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-binding Rossmann-fold superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37