SimpleSearch - Line and FST details


Line specific information

 
Line ID 152H03
Vector Used pAC161
Line Availability available as T3 set from NASC (N414583)
Segregation Analysis 50:49:34
Confirmed for Hit At5g38570
Parent of DUPLO pair none
Parent of pair(s) 49971, 88107

Gene hit At5g44582

 
Sequence (A. th genome BLAST matches underlined) 
>24-K013139-022-152-H03-8409
TTTGATCCATTGTAGATTTCCCGGTACATGAAGCCTTTACTCAATTGTTTTTCATAAGAT
TATCAAATTAATTTTAAAAGAGTTGAGTACTGGAGAAAATTAATACATTTGCATTTAAAA
TTATACTTTTTGTTTGGGTTTTACTTCTTGGAACGTTCCTCTCCATGATTCCATCCGAAT
TTATAATTCCCTCCCATTCGTGTATATATAAATAATAGTCGCAGTAAAGGAAAGAAAGAA
AGAAAAAGAGATGGAAAATAATACTTTTTCTTCAAAATCTATTAATTTGCTCATATTGCT
TTTGCTGCTTTGTACCTTTCTCTGCCAAACCGAATCTGCCCTTCCCTCTCACCAAGAACT
TGTAATCACTGGTTAGTGTTTTGACAATTATATAACATCAACATATGTGTATATATAAGG
TTGTCAAGGTGTTAATTGATGGGAAAATTCATGAAATAGTATATTCACATGTATATATAT
AGGAAGGAGGATGATGAGTAATTATAAGCCCAATACTGACATAGGAACACCATCATCAAC
CAGTGACCGTGGTGGCGGTGGTAATGGGTATGTCCCTCCTCTTTTCTTATTTTACAATTG
TTATCA
GenBank Accession AL757830 [GenBank]
Graphic View Graphic view of gene At5g44582
Predicted Position of Insertion Chr5:17980675 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K15C23
Hit Gene Code At5g44582 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At5g38570

 
Sequence (A. th genome BLAST matches underlined) 
>24-K013134-022-152-H03-8409
ATGTAGCGTTTTTCTTTTTACTTTATTCTTTTATCAGTCAAGAACTGTTGCAGTCTTTAA
GTGACAAGCGTTTTTCAAGATGTAAACTGCAATATCTCTATCTTGTGGTCTCCCAAAATA
TGCTGACCAGTCAGTATCTTTAGACTCGACAACAAGCACTCAAGAACAGAACTCGGTTGA
TTCCAGCAAACAATATCATTACGCTCATCATCTATGAGACCAAGCAGAAGAATTAGATTA
AAAACCATATTAGGTACCAGAAAAACAAAACATTTTTTTTTTTTATAAGGAAAACTTATT
TTATTTTAAAGGAGGTGAAAAACTGGGGGGTAAGGAAAACCTTTGACCATTGGGCCCAAA
AAATTCAACAAATAAAAGGGGCCCATACATAGTTTCAAAGGTTCAAAAGGGTGGAAAATA
AACCCTTCCCCATACAAATAATCCGGCCCCCAATATGGAAATCTTTACCTCCGGTTTTTA
GGGGAT
GenBank Accession AL757829 [GenBank]
Graphic View Graphic view of gene At5g38570
Predicted Position of Insertion Chr5:15449370 - go to primer design
BLAST e Value 2e-132
Hit Clone Code (BAC ID) MBB18
Hit Gene Code At5g38570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box/RNI-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37