SimpleSearch - Line and FST details
Line specific information
| Line ID | 154A02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414690) |
| Segregation Analysis | 50:40:39 |
| Confirmed for Hit | At2g35060 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 876, 6084, 6086, 6092, 6123, 6126, 6152, 6210, 10533, 81244, 81245 |
Gene hit F16J10
| Sequence (A. th genome BLAST matches underlined) | >58-K018347-022-154-A02t-8409 TGATCTGAAATTTCCCGGACATGAAGCCTTTACAATTGATCCATCATACTCAATCTCTCT CTCAAATCTCTAAAGGTTTACCACAACTTTGGCAACTCTTATATAGGAGAGGGATGATAA CAAACACAATAGAATAAGATGTAGATAACTCCTAACATATCTTTAGATTACTCCTAAAGA TTTATCTTAATCCTATTTTAAAACATAACTTTTATTCCCTAATTTATTGACTTCATGCTT ATCCCAACAAACTCCCCTTTAGGCATCCAAGTTTGGATTAGGAGGGCTATGGGATCCTCC CCTATAGTGAGAGAATGATGGCTTTGGATTTAACGACAATACTCTTGCGCTATGGTTTTT TTTTGTGAACCACCCCTGCCGCTTGGACTCGTTGGAGGGTTCCAGATATTACCCTTGGTT ATAAAAAATAAGAGCGCACTTTGGGACACGGATACTGGATCCAGAATTTTTATTGTAAAT GCGTATCATGCGGGCGTCACCGTGTGTGATAGGATTTGCATCTCGATTTGGGGGCGTAGA AGACGCCAGCTTGAGGAGCTCCCCAAATCTTGAGAGGCGAGGTCTGGTTAGGTCCTCTAT TTGAATCTTTGACTCCATGGGAATTGGGGATCCGCTA |
| GenBank Accession | BX285186 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:1970475 - go to primer design |
| BLAST e Value | 7e-129 |
| Hit Clone Code (BAC ID) | F16J10 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | BX285187 [GenBank] |
Gene hit At2g35060
| Sequence (A. th genome BLAST matches underlined) | >09-K013135-022-154-A02-8409 CACTTAAATGTACACTTTATATTCGTCAATTAGACTAAGCTTCTACTGCTATTTGTATAT GTTTAGGATGTGGTCTATGGGATCCTACTAATAGTGATTTCCTCTGTTTTTTATAATCGG TGTTACTGACTTGATTGTCTTTGTAGGTGGGACGTTTGCTTTGTATTCATTACTCTGTAG ACATGCCAAAGTCAAAACAATTCAGAACCAACACCGTACTGATGAATATCTTACTACTTA CAGCCGCACTACGTTCCATGAGCATTCCTTTGCTGCTAAGACTAAAAGATGGTTAGAAAA GCGGACATCTATGGGATCCTCCCTATAGTGAGNCCCCCCCACACTTTCCTTCCCCTCCCA CCCCCCCTCTCCCCAACGTTTCCCCCACCTCACTATTCCACATATTCATTTACCACACAC CAAATACAATTC |
| GenBank Accession | AL757904 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14777762 - go to primer design |
| BLAST e Value | 3e-113 |
| Hit Clone Code (BAC ID) | F19I3 |
| Hit Gene Code | At2g35060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | K uptake permease 11 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T16L4
| Sequence (A. th genome BLAST matches underlined) | >09-K013140-022-154-A02-8409 TTGGATCCATGTAGATTNTCCCGGAGCATGAAGCCTTTACAATTAACATGTACACTTTAT AATTTTGTAATTAGACTAAGCTTCTACTGCTATTTGTTATGTTTAGGATTGGCCTATGGG ATCCTCCTTATAGTGAGNNNNTNNGGGNCTGTTATCTGCGTCCCTGTCGTAGCACGCCTT TGAAAGAGGAACCCTGGCTTTGTAAGGACCAATCCGTTGACCGCCGGGTTCATTCCTATA CCAAACCATCACCGTTCTGACGAAGATCTCACTACTTGTTGCCGCACAACTAATAACGAT CATTTCTTTGGTACTTTCATTGACACAGCCTGGTAAAAGGGGCCATCCATCCCACCTTCC GTCTACCGTTTTTTTCGTCACTCCCCCCCCTCCTTTTTTACGGAAATTCTCTTACCCACT CTTGCCCACACCCCTTCTTTACCTCCGTCG |
| GenBank Accession | AL757905 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:14524157 - go to primer design |
| BLAST e Value | 8e-27 |
| Hit Clone Code (BAC ID) | T16L4 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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