SimpleSearch - Line and FST details
Line specific information
| Line ID | 155A07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414791) |
| Segregation Analysis | 100:95:71 |
| Confirmed for Hit | At5g01490 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At3g61430
| Sequence (A. th genome BLAST matches underlined) | >49-K013136-022-155-A07-8409 NTGATCCATGTAGATTNTCCCGGGACATGAAGCCTTTACAATTGAAATGAGTGAACTTGA AGCTGCCATTAGTGTGCACTAAAGACTGATTCTAATATTGGATTTGTTGCTTACCGGCTT GAGTTTTGTAATAATTGTGCAGATTCTTGCACCACTCCCAATCGGGTTTGCGGTTTTCTT GGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCCAGCTATGGGATCCTC TAATTAGTGAANNAAANNANATCAACGCATTATTTTTGTGGTTTAATCTATGGGATCCTC CCTATAGTGAGNN |
| GenBank Accession | AL758005 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:22734677 - go to primer design |
| BLAST e Value | 8e-101 |
| Hit Clone Code (BAC ID) | F2A19 |
| Hit Gene Code | At3g61430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plasma membrane intrinsic protein 1A |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At5g01490
| Sequence (A. th genome BLAST matches underlined) | >20-K032733-022-155-A07C-3144 CCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACC CGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACATATAATGATAGAAAGCAAATA AATGGTAAAAGAAGAAAACAAAGAAGAATAAATTACTCGGTGAGAAAACTGATACGTTCG GCCAAAGGTGTCAATCCCAGCAAGCTCAACGCAAAGACCCACGCCTGTTTTTTTGTTACA CCACGCAATAACAATTAACATAACATATGGTTTAAGACGAATGTTTGGTTTATTATTCCG ATAAAATAAAGATATATTTGTTGGAACTTACACGTGGACAGTCATAGCGGTGAGCGACGA CGGCGAGAGGAACGGCCGGGAAGAGGATGAACAATTTGGTGCCGAGAAGAACTTCTTGAA GATTCGTCAAGATTCGTCTCATAAACTCCCANCCGAACT |
| GenBank Accession | HG968786 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:196102 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F7A7 |
| Hit Gene Code | At5g01490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cation exchanger 4 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX285237 [GenBank] BX285237 [GenBank] |
Gene hit At3g02625
| Sequence (A. th genome BLAST matches underlined) | >49-K013141-022-155-A07-8409 NTGATCCATGTAGATTGTCCCGGACATGAAGACCTTTACAATTGAATATATTCTACATTG AAGCTGCCATTTGTGTGCACTACAAGACATGTTGTACTATTGGATAAGTTGCATACCGGT TTGTGATTGGCAATACTTGAGAGAATACTTGCACCACTCCCACATGCGTGATGGCGGATC TTTTGGTATCACTTGGACACCATCCCAATCAGAGGCGCAGGCATCAACCCGATTTAATGC ATGCCATGGAATTATTACTATCTTTCTGCATTATATATTACATAGCATCCTATGGGATCC TCCC |
| GenBank Accession | AL758006 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:4138141 - go to primer design |
| BLAST e Value | 1e-25 |
| Hit Clone Code (BAC ID) | MGH6 |
| Hit Gene Code | At3g02625 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | failed, line belongs to a contamination group, please check line 155B08 |
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Last Updated on 10.06.2021 13:37 |
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