SimpleSearch - Line and FST details
Line specific information
| Line ID | 155B08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414804) |
| Segregation Analysis | 50:49:39 |
| Confirmed for Hit | At3g02625 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g02625
| Sequence (A. th genome BLAST matches underlined) | >58-K013141-022-155-B08-8409 TTGATCCATGGTAGATTTCCCGGACCATGAAGCCTTTACAATTGAATATATACTCAAGCT GCCCTCTCTTTTTCTGCAGCCAATATATGTATGTCCCCTTGTTCCATTCACATTCACATT CACTAAATGCCAATGCAAGAGAGAAGAGAGAGATGATGTTCCATGCTCATGACAAAACTT ATCATATAGTATAATATCGGTCAAAAGAGAGGGGCTACCACCAACCTGATTTAATGCATG CCATGGAATTATTACTATCTTTCTGCATTAGATATTACATAGCATCCTATGGGATCCTCT ATAAGGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTATATTNANNANTNT ANTATGGGGGTANTTGTAAATAANAATTATTNNAATNNTNNTTATANTGANGATGNNANN AGTNTGGGAGGGGAGGAGAGATGGNAAAAGAGAGNGATTGGTGGAGGATGGTATATAGGT GTATGTNAAGGTGGGGAGGAATGGGGGAAAGAAATGGATTTAATTGNGAGGTTGGGGGAA AGAAGGTGTTGATAAGTAAGAGTAGTAGGGTGGGAANGAGAGGGGGAGGGTTTTGGGATG GAATGATNGGGGGGGGGAAAGTGAAGGGGTGAGGGGTAAAGATAGGAAGGTTATTATTGG GATTTGGGAAATATGGAATGGTTGTTGGAATAAGNNTAGTAAAGGAAGATAAAGGGAAAG AAAGGGGGGGAAGGTGATTTATTGGGGNTGTGGGGGATGANGAGGATGGTGAGGTGTGAT GGTGGTGGTAAGAGGGNTGGTGAGAGGTTTGGGGAGGGGTNGTGGTGGGGGAANAGGGTA ATGATTTGTGGTATAAAGGAGGGAGAGAGGTAGGAGGGAGAANGGAGAGTGGTAGGTGTG GTTGGTGTTGAAGTGAGGGAGTTGGTGGGGGAAAAAATAAAAGGTGGGATGATGGTGAAT GGAAGAAGGGAGAGTTTATTGGAAGTTAGAAAGGGGTGGTTTTTTGG |
| GenBank Accession | AL758028 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:4138138 - go to primer design |
| BLAST e Value | 1e-102 |
| Hit Clone Code (BAC ID) | MGH6 |
| Hit Gene Code | At3g02625 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | confirmed, show confirmation sequences |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >58-K013136-022-155-B08-8409 NTTTGATCCATGTAGATTTCCCTGACATGAAGGCCTTAATCTTATCTATGGGATCCTACC CATATAGTAGACTTCACACGTGGATCGATCCGTCGTACCAGCTTTGCAATTCATACAGAA GTGAGAAAAATGGCTTGTATGAGTATCCTGTTCAGCTGTGACTACAGTCAGCCGGGCTTC TACGGTGCAATCGGCCGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCC AGTTAAGAAGGTCAACACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTG CATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGACAGCCG GCGGCTATGGGATCCTCCTATAAGGTGATGGGATCCTCCCTA |
| GenBank Accession | FR804642 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:15385233 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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