SimpleSearch - Line and FST details
Line specific information
| Line ID | 155B11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414807) |
| Segregation Analysis | 50:41:40 |
| Confirmed for Hit | At1g24380 At1g63820 At1g16080 |
| Parent of DUPLO pair | 11737 |
| Parent of pair(s) | none |
Gene hit At1g24380
| Sequence (A. th genome BLAST matches underlined) | >46-K018348-022-155-B11t-8409 TGATCTGANATTTCCNGGACATGAAGCATTTACAATTGATATATACTCAATTGAAGATCA ATGGATACTCATTGCTGTTCTTGAAGCTACTCCTCAGCCTATGGGATCCTCCCTATAGTG AGAGCTATATTTCCCTTGTACATCAAATGCTCAACTTGATTAATGCTTGCCGGAAACCCC TGGCGGACACATGACCCACACTACGTCGCAGATTTGCCTGAAACGACCACCTGTTTGTGA GCCCCAAGATTGCTTCTTCTTTCACTATGGGATCCTCCCTATAGAGAGAAAGACGAGTTC ATCTTAGCCGTTGAATTTCTTTGATCAAGATCTTACCACTGCATTGATTAGTCATTTCTT GTCTATATCAAGTATCACTTCTTTAGAAAAAAATAAGTTAATCTTGACCGTTGAATTTAC CAAGATCTAACCGTTGGTATTGCTTTATATTCTCTATATAAATGTATATTACTCTATGAA TAATCACACATCTCCAACTCTTTTTCTTACTTCTTATATTTTTCAAAAATGAGTTCAAGT CGCTTTTTGTCATATTCTATTCAAGAAGATATACAATTGTGTCATGTGTATCTCGATGTT TCCCAAAATTCAACGAAGACCAAAAAGATCTTTACAAACTCGAATGACCGTCATTCTTTC TGCAGTCTCAAAGCTGAGAGGATGCGTTAACCCAATTGAGAATAAAA |
| GenBank Accession | BX285252 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:8646100 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F21J9 |
| Hit Gene Code | At1g24380 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | no-apical-meristem-associated carboxy-terminal domain protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL758034 [GenBank] |
Gene hit MFC16
| Sequence (A. th genome BLAST matches underlined) | >82-K013136-022-155-B11-8409 TTGATCCATGTAGATTTCCCGGACTGAAGCACTTACAATGGAATATATTGCTACAGTCAA GACCGATGGATTCGAATAGGGGGTGCATGTAAGTCGCACACTCACACCTTGGGTCCTTCA AATACAACCGGAACTGCTTCTCCTCTCTTCACCAACAAATCCTCGCCATTACCCATTTCC TGTAACGCCCTTCCGACTCTTCCGCCACCCACAATCACAGCAGGCGCTATGGGATCCTCC CTTATAGTGAAANANGANAGATGCAAAATTTATTGGAGGTTAAGCTTGTTGTAGGTAATT CATCCATTGTGGCTATGTATGTTATGTACTTATGTCATGTGTAATGAATTTCACTGTGGT GCAAGGTACGTAATGATTTGTGTGTTGGCGGAAGAGTTGTCCAACATAGACCATCCATAG TAATATATCATACATGCTATGGGATCCTCCC |
| GenBank Accession | AL758033 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17950713 - go to primer design |
| BLAST e Value | 8e-98 |
| Hit Clone Code (BAC ID) | MFC16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | BX285251 [GenBank] |
Gene hit At1g63820
| Sequence (A. th genome BLAST matches underlined) | >82-K013141-022-155-B11-8409 TTATATATCAAATGCAACTATTGATGATCTGCTTGCCGGAAAACGCTGGCGGACATACAG ACCACACAGTACGTGGCAGATTGGCCTGAGACAACCATACTGTTAGAGAACCCCAAGATT GCTTCTTCTTTCACTATGGGATCCTCCCTATAGTGAAAGANGACGCNNCATCTTANCCGN NGAATTTCTTTGATCAAGATCTTACCACTGCATTGATTANTCATTTCATGTCTATATCAA GTATCACTTCTTTAGAAAAAAATAAGTTAATCTTGACCGTTGAATTTACCAAGATCTAAC CGTTGGTATTGCTTTATATTCTCTATATAAATGTATATTACTCTATGAATAATCACACAT CTCCAACTCTTTTTCTTACTTCTTATATTTTTCAAAAATGAGTGCAAGTCGCTTTTTGTC ATATTCTATTCAAGAAGATATACAATTGTGTCATGTGTATCTCGATGTGTCCCAAACTGC ACCGAAAACCAAAAAGACCGTTACCAACTCGAAAGACGTAAATTGTTTTCGGAGTCCCAA AGCTGAGA |
| GenBank Accession | AL758034 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:23683024 - go to primer design |
| BLAST e Value | 1e-13 |
| Hit Clone Code (BAC ID) | T12P18 |
| Hit Gene Code | At1g63820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CCT motif family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX285252 [GenBank] |
Gene hit At1g16080
| Sequence (A. th genome BLAST matches underlined) | >82-K013136-022-155-B11-8409 TTGATCCATGTAGATTTCCCGGACTGAAGCACTTACAATGGAATATATTGCTACAGTCAA GACCGATGGATTCGAATAGGGGGTGCATGTAAGTCGCACACTCACACCTTGGGTCCTTCA AATACAACCGGAACTGCTTCTCCTCTCTTCACCAACAAATCCTCGCCATTACCCATTTCC TGTAACGCCCTTCCGACTCTTCCGCCACCCACAATCACAGCAGGCGCTATGGGATCCTCC CTTATAGTGAAANANGANAGATGCAAAATTTATTGGAGGTTAAGCTTGTTGTAGGTAATT CATCCATTGTGGCTATGTATGTTATGTACTTATGTCATGTGTAATGAATTTCACTGTGGT GCAAGGTACGTAATGATTTGTGTGTTGGCGGAAGAGTTGTCCAACATAGACCATCCATAG TAATATATCATACATGCTATGGGATCCTCCC |
| GenBank Accession | AL758033 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:5514724 - go to primer design |
| BLAST e Value | 1e-56 |
| Hit Clone Code (BAC ID) | T24D18 |
| Hit Gene Code | At1g16080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL758033 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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