SimpleSearch - Line and FST details


Line specific information

 
Line ID 155H11
Vector Used pAC161
Line Availability available as T3 set from NASC (N414879)
Segregation Analysis 50:49:46
Confirmed for Hit At1g57720
Parent of DUPLO pair 11934
Parent of pair(s) none

Gene hit MXA21

 
Sequence (A. th genome BLAST matches underlined) 
>88-K013141-022-155-H11-8409
ACTGGATCCATGTAGATCTTCCCGTACATGAAGCACTTTACAATTGAATAAAAATATATA
CATTAAACCTTTCATTATTTTGCTCTTCTTCTCCTTCTTCTTAAACCCTATNGAATCCTC
CTNATAGTGANGNGGNGNNNANAGCGTGNTNNCNNAAATTGACNCACGTCAACAAGCATG
AGTGGCCTCATCACAGGCAGATAGCGCAATGCAAGCGTTTGTACTAGTTGCATACGGACG
ATACAACGGAGAAAGGGTGTGTGCACACAATGGACTATGCTGCTTCTTCTGTCCGACGGA
GCAATCCGTAAATGGTGGTGCCGCGGCGCTGACCGATCTGCACATGAACTAAGGCGTGTC
CATACCACGTAACATTAACATTTGCTACGGAACCCTGACCACACTGGCTTTGACTGGAAC
TGGAGACAACATGGTACCTAACACGAACAAGATGAACACTACTCCCGTGAACTTCATGTC
TTGAAAATGCTTTTCACAGCTTTA
GenBank Accession AL758125 [GenBank]
Graphic View Graphic view of sequence AL758125 of line 155H11
Predicted Position of Insertion Chr5:15226254 - go to primer design
BLAST e Value 3e-45
Hit Clone Code (BAC ID) MXA21
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g57720

 
Sequence (A. th genome BLAST matches underlined) 
>80-K018348-022-155-H11t-8409
ATTTACATTGAATAAAATATATACATTAANCCTTTCATTATTTTGCTCTTCTTCTCCTTC
TTCTTAANCCCTATNGNATCTNCCCTATAGTGAGANGNNGNNATCNCTTGNTTACTATCA
TTGATTCATGTCAATGAGCATGTGTTTACTTTTCAGGCTCACATTGAGCAATGGATCGAT
TTCTCCTCATTGGAGATTGATGCTAACATGTTGAAGGGGTTTGCTCCAAGAATGGGCTAT
GCTCCCATCTCTGCCCCAGAAAGCTTTCCCTCATTTTTTGTGCCGGGGCTCATGCACTCT
ACTGTACTAACAAATCATGCTACTCCTTACTCGCTAAGATTAGTATTTGACTATGGGATC
CTCCCTATAGTGAGANNNANNNNNNNNNNNTNNNNCAANNTANCTCNCNCNCAAGGGGGG
AAGGNCCCTCCCGGGCAGTTCAGGGCGAGGAAGTCCTTGGGCAAAGCACAAGAAATAGAG
CCCGGGAACTAACATGGGAAAGAGGGGACGGGGGGAGGACAAAGCGAAAACTTATAGGAC
AACAATGGTACCTGCAACGACAAACAGGGGGGTTATTAGGCCGAGTTCCGCGACACAAAC
CCTAAACATCCCCCGCTGCGCGCCGCCAGTGTTCTCACAAACCAAAGGGGGTCCGAAAGA
GGAGGGTACGGGTGGTCCCATGATGTCCCACCTTAAAGAGGGGAAAGGAGAAGGATCGTG
AAGAA
GenBank Accession BX285285 [GenBank]
Graphic View Graphic view of gene At1g57720
Predicted Position of Insertion Chr1:21378578 - go to primer design
BLAST e Value 3e-112
Hit Clone Code (BAC ID) T8L23
Hit Gene Code At1g57720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Translation elongation factor EF1B, gamma chain
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL758124 [GenBank] BX285285 [GenBank]


Last Updated on 10.06.2021 13:37