SimpleSearch - Line and FST details


Line specific information

 
Line ID 158H04
Vector Used pAC161
Line Availability available as T3 set from NASC (N415160)
Segregation Analysis 50:27:27
Confirmed for Hit At1g22880
Parent of DUPLO pair none
Parent of pair(s) 5516, 5623, 5679, 5720, 5746, 8677, 10381, 91126, 91142, 91168, 91169, 91170, 91172, 91173

Gene hit At1g22880

 
Sequence (A. th genome BLAST matches underlined) 
>32-K013215-022-158-H04-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGACTTT
GAGAGTGCTTCTCTGTAATTGGGACTTGCATAGGTATTCTCCAGTGAAAGCGCAGAGAGA
AGGAACACAAAGAAGAAAGGAGAAGCCATTCTTGTTATTGTGTTGGCTTGAGGGTACGAC
TTTATCACACACGTATATATATAGCTATGGGATCCTCCTATTAGTG
GenBank Accession AL758458 [GenBank]
Graphic View Graphic view of gene At1g22880
Predicted Position of Insertion Chr1:8095865 - go to primer design
BLAST e Value 1e-81
Hit Clone Code (BAC ID) F19G10
Hit Gene Code At1g22880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cellulase 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g06365

 
Sequence (A. th genome BLAST matches underlined) 
>32-K013242-022-158-H04-8409
NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGTTCC
CTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGACGCGAGTTCTATCGGGTAAAGCCAA
TGATTAGAGGCATTGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGG
ACGTGTCGGCTGCTTTGTTGAGCCGTCACACGGAATCGAGAGCTCCAAGTGGGCCATTTT
TGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCG
CGCTAACCTATGGGATCCTCC
GenBank Accession AL758459 [GenBank]
Graphic View Graphic view of gene At3g06365
Predicted Position of Insertion Chr3:14201051 - go to primer design
BLAST e Value 9e-144
Hit Clone Code (BAC ID) F21A14
Hit Gene Code At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37