SimpleSearch - Line and FST details
Line specific information
| Line ID | 161H11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N415455) |
| Segregation Analysis | 50:15:12 |
| Confirmed for Hit | At1g32250 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6409, 6412, 10633, 83143, 83231, 83240 |
Gene hit At1g32250
| Sequence (A. th genome BLAST matches underlined) | >88-K013272-022-161-H11-8409 GTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGCGAAC TCCTGGAAGTTAATCCGGCCATCGCCATCGCTATCCGCCTCCTTTATCATCCCCGTCAAT TCCGCCACCGTCAAGGCGTGGCCAAGCTTATCCATAGAGTGAGCCAATTCCGCCGCAGTG ATAAACCCGTGTGCCATCCGTGTCGAATATCCTAAACAATCGGAGAAGCTGCTCCTCCGT GTAAGGAGTTGTCCTCTTCGCCGGCGAAAGAAGCTCCGGAGAGACCAAAGCTACGAACTC CGGGAACTCTACGAGTCCGTTGCTTTTAGTGTCGGCTTTGTCTATTAGCGTTTCGAATTG GTCTGGACTTGGTTTAACCCCTATGGGATCCTCCCTATAAGT |
| GenBank Accession | AL758748 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:11640301 - go to primer design |
| BLAST e Value | 1e-179 |
| Hit Clone Code (BAC ID) | F27G20 |
| Hit Gene Code | At1g32250 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Calcium-binding EF-hand family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g24180
| Sequence (A. th genome BLAST matches underlined) | >88-K013267-022-161-H11-8409 CTTGATCCATGTAGATCTTCCCGTACATGAAGCACTTTACAATCTGAATATAGTCTCGTG AGTTATATTCAATATGCAAAGTCTATGATACGCCACTAACTTTAGGGTATGGGCGCGATA AGGGTTATCCGCGTCACATCAGTGAACAGTCGCTATGTAAAATACTACCATGTGAAAAGG ACTGGCGTATTTATAGATATATGAGTCTTATTCTGTGTGGCAGCTCAGATGATGGATGAC GTGACCACTGAGAATTACGTCGATGGAAACATGACGATAAATGCGGTCGCTTGTAGTGTA CTACATATGGAAACAAAAATAAAAATAGAGGACTATAAGATAACGGAAACAAAGGTGGAA AGAAGTACAAGATATTATCTATGGGATCCTCCCTATAGTGANNNNNN |
| GenBank Accession | AL758747 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12549711 - go to primer design |
| BLAST e Value | 6e-31 |
| Hit Clone Code (BAC ID) | T19F6 |
| Hit Gene Code | At4g24180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | THAUMATIN-LIKE PROTEIN 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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