SimpleSearch - Line and FST details


Line specific information

 
Line ID 164D09
Vector Used pAC161
Line Availability available as T3 set from NASC (N415693)
Segregation Analysis 100:88:62
Confirmed for Hit At5g52450
Parent of DUPLO pair none
Parent of pair(s) 5899, 5921, 5940, 5951, 7713, 91596, 91611, 91663, 91675

Gene hit At5g52450

 
Sequence (A. th genome BLAST matches underlined) 
>68-K013275-022-164-D09-8409
CTGATCCATGTAAATTTCCCGGACATTTTTGCCTTTTTATGGACAGATTGGGAGAGAAAA
CGCCAATTACCAAATTAAAATGTTTTTCTTGTTTAACAAAAATGAATGCTTTAAGCAGTT
GCTTATGGCTCTTATTTGAACTGGAAACCCACTTGTCAAACTTTGAACGATGTCAACAAA
TCCAAATTTTAATTTTCATTTGAAAGTTTTAAAAATGGGGTTGCCCGTTTTTACTTGGGA
AGCAAGAAACTACACTGATTCATTTTTCCATTTTCCTCATGAACAGATGGGAACAGCAGG
TGCGTTAGATACGCTTTGGGGCCAAGCGTACGGAGCAAAAAAGTCCGGAATGTTAGGAAT
ACAAATGCAAAGAGCTATGTTAGTTCTTACACTATGGGATCCTCCC
GenBank Accession BX546560 [GenBank]
Graphic View Graphic view of gene At5g52450
Predicted Position of Insertion Chr5:21291052 - go to primer design
BLAST e Value 9e-141
Hit Clone Code (BAC ID) K24M7
Hit Gene Code At5g52450 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX546560 [GenBank]


Last Updated on 10.06.2021 13:37