SimpleSearch - Line and FST details


Line specific information

 
Line ID 164D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N415695)
Segregation Analysis 50:45:33
Confirmed for Hit At1g02520
Parent of DUPLO pair none
Parent of pair(s) 84133, 84147, 84160, 84174, 84185, 84196, 84206, 84213, 84218, 84224, 84231, 84238, 84244, 84249, 84254, 84255, 84256, 84257

Gene hit At3g11310

 
Sequence (A. th genome BLAST matches underlined) 
>84-K013270-022-164-D11-8409
GTGATCCATGGTAGATTTCCCGCACATGAAGCACTTTACAATGTAGATTGAATTGGTTTC
TTATGACTTGATCACTAGAGATAGAGTGGCTACTTCTTGTTCTATGGGATCCTCCTTATA
GCGACTCTCTCTGCTATATTTTATTGAGACGAAGATTCGTCGCGACAAGTTCAATATAAT
GTAAGTGTTACAGGATTTTTGGAGTTTCTTGAACAACAAGTAACCTTTGTCTACAATTTT
ACGCTCACGGGCAAACTATGAACGCTTCTATAGCAGGCTCATATCTCGTGCCTTAGAGAG
ACGGTTCGGAGTACTATTGTAATTATTCCGAAACGTGGTGTACCTTACCCTTACCCGTTT
GGTCGGCCTCTTACCTAGAAAAGAAAATCATCGTTTTCGGTGAGATTTTGAAGTTCTAGT
TAGCTATGGGATCCTCCCTTTAGTG
GenBank Accession AL758966 [GenBank]
Graphic View Graphic view of gene At3g11310
Predicted Position of Insertion Chr3:3542275 - go to primer design
BLAST e Value 8e-169
Hit Clone Code (BAC ID) F11B9
Hit Gene Code At3g11310 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Myb/SANT-like DNA-binding domain protein
Insertion Classification 3' region
Confirmation Status unknown

Gene hit At1g02520

 
Sequence (A. th genome BLAST matches underlined) 
>84-K013275-022-164-D11-8409
TGGGATCCTCCCTATAGTGAGGAAGGNTGCTTCTTTTACTGGAGAGAAGCACGCCATTAA
CAGCTACAAGAAGTTCATAACATGGGCGTATAAATCAAGCATGCAACAAGGTGTCTCCAC
CGGTTTAGGACTTGCAGTAATGCTCTTTGGATCTTACAAAGCTATGCTTTGGCTATTCGG
TTAGGTGGGAACATGATACTCCAAAAAGGTTATACCGGTGGCGCTGTGATCAACGTGATC
ATCATTTGCCCTGCGGGTTCAATGTAGGCAAAAGCCTATGGGATCCTCCCTATAGTGANN
NNNNNNNNNNNN
GenBank Accession AL758967 [GenBank]
Graphic View Graphic view of gene At1g02520
Predicted Position of Insertion Chr1:525156 - go to primer design
BLAST e Value 4e-87
Hit Clone Code (BAC ID) T14P4
Hit Gene Code At1g02520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-glycoprotein 11
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37