SimpleSearch - Line and FST details
Line specific information
| Line ID | 164G02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N415722) |
| Segregation Analysis | 50:30:21 |
| Confirmed for Hit | At1g03620 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3202, 7008, 94435 |
| Note | |
Gene hit At1g03620
| Sequence (A. th genome BLAST matches underlined) | >15-K013270-022-164-G02-8409 TTGATCCATGTAGATTTTCCCGGACGTGAAACACTTGATGGCTTTGGTGGATGTAGATGG AAGGCTGATTAAACCGAATACTGCCTTCTCTTGTAATAGAAATTAAGGCAATATGACTAC TGCTACGGACGATGATGTGCTGTTACAATGATGAACAGGAGTACGAGAGGGCGGTTCAAT ATGCTGTGCTGTATAGCTTTCGCGATGATGGATGCTCAATGGCTTGCAATGCACATACAC ACAGTACGAGAGCGATTGTGTGGTTTGTTTTGATGGATTCACACAAGGACAATGGTGTCG GAATCTTCCTGGTTGTGGACACGTGTTTCATCGAAAGTGTGTGGACACTTGGTTGCTCAA AGCCTCGACGTGTCCTATTTGCAGAGCTATGGGATCCTCC |
| GenBank Accession | AL758993 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:904717 - go to primer design |
| BLAST e Value | 3e-17 |
| Hit Clone Code (BAC ID) | F21B7 |
| Hit Gene Code | At1g03620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ELMO/CED-12 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g17370
| Sequence (A. th genome BLAST matches underlined) | >15-K013275-022-164-G02-8409 GTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAACTCGCTCAATCTTT TGGAGTGGAGCTTAAGGTATTTTGAATTTACCAGAACAATCAACCTTAGGAGTTAGGACT TACTTACAGCGGACCCTTTTGCTGTGTTTTCTATATAATGTTCTGGTGCATAATTGTTTG ATTCCTATGGGATCCTCCCTATAGTGAGGG |
| GenBank Accession | AL758994 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9706344 - go to primer design |
| BLAST e Value | 2e-70 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g17370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Oxidoreductase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At2g18670
| Sequence (A. th genome BLAST matches underlined) | >15-K013270-022-164-G02-8409 TTGATCCATGTAGATTTTCCCGGACGTGAAACACTTGATGGCTTTGGTGGATGTAGATGG AAGGCTGATTAAACCGAATACTGCCTTCTCTTGTAATAGAAATTAAGGCAATATGACTAC TGCTACGGACGATGATGTGCTGTTACAATGATGAACAGGAGTACGAGAGGGCGGTTCAAT ATGCTGTGCTGTATAGCTTTCGCGATGATGGATGCTCAATGGCTTGCAATGCACATACAC ACAGTACGAGAGCGATTGTGTGGTTTGTTTTGATGGATTCACACAAGGACAATGGTGTCG GAATCTTCCTGGTTGTGGACACGTGTTTCATCGAAAGTGTGTGGACACTTGGTTGCTCAA AGCCTCGACGTGTCCTATTTGCAGAGCTATGGGATCCTCC |
| GenBank Accession | AL758993 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:8093598 - go to primer design |
| BLAST e Value | 6e-80 |
| Hit Clone Code (BAC ID) | MSF3 |
| Hit Gene Code | At2g18670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 121H09 |
|
Last Updated on 10.06.2021 13:37 |
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