SimpleSearch - Line and FST details
Line specific information
| Line ID | 165A11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N415755) |
| Segregation Analysis | 50:2:2 |
| Confirmed for Hit | At5g19190 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12022 |
Gene hit At5g19190
| Sequence (A. th genome BLAST matches underlined) | >81-K013365-022-165-A11-8409 GTGATCCATGGTAGATTTCCCGGACTGAAGCCCTTTACAATTGAATATATCCTTGTGGAA CCTACAATTGAAGAGTATCAGCAAAATCATGAGAACTCAAGAAGTACTCTCACCACTCAC AACAATAACAACAACAAGAGCAACATGAACAGCACTATGGGATCCTCCCTATAGTGAGAG TCTAGCGTACAAAATAAAGCGTTCCTTCGATTGGAAATACTAGGGCGAATCGTGGTGCGG GATTAATATGTGTGCCACGTTATTTTTTTGGGGTAATCCGACCTGTAAAGAGGAGCGTGG AGGGGGGGGTGGGGATTCCTCCCGCTCACCAGGATATGGTGGGATATGGGGATGTTTGAT CCACTTGGGTCAGGAGAAAAAAAGAGAGAGCCGGTCGGCCCTCATTATGGTAGCTTGGGA CCTCCTTTTCTATATATATGTCTTTACTCT |
| GenBank Accession | AL759032 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6457761 - go to primer design |
| BLAST e Value | 1e-41 |
| Hit Clone Code (BAC ID) | T24G5 |
| Hit Gene Code | At5g19190 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g30424
| Sequence (A. th genome BLAST matches underlined) | >81-K013360-022-165-A11-8409 CCCCCTGATCCATGTAGATTTCCAGTACTGAAGACATTTCAGTTGAATTATCGCTATGGA ATCTTTCTATAGTGAGACACAAAAAAAGCCGAACTCCCTAATTCTTTCAGCATTATAACA TGAGGACCCTCACGAGCAACATGATCAGCGCTCCCGTTGCCTTTCCCTAGTGGATTTGTC GTGTTCACATAAGACTTTACCCTTAAGTGGAACCCACAGGACGAAAATTGTACGGGACAT TATATATGTGTATCTAATTATTTTTTCATGTATCCATAGTTATAAATTTTAGTGTCTAGT ATGGGAGGGGTATTACTCCAATCCCCCATCATATGGTGGATATTCAGATATCTCATCCTG TCGTATCATGACCAAGTATACAGCCCCAGTATTCCTCATCACCGGCACCTAGGCAGCTCC TTTCCTATATGGTTCCCTTTCTCCTCCCCCCCACCATGATATATATGCTCCCCCTTCCTC ACATCTACCTTTTTTCCATCCCCTTGTCCCACTTCCAAACCCTCCACTTGGCCCCCCATC CCGCCCCTTTTCCTTCGTCAACCACAAGTGCGCCCCTTCAACCCACTCTTCGCCCACCCC CCGGTCGTGGGGAGCAACCCCCAAAACCATCCCGCGACAACCTCCATATTCGCCGACCCC ACCCACGTTCCCCTGGCGCGTGACCGCCGCATCCTTTTTCCTAGCGTTCACCCAAAAATC ACTCGTCATGTCTCCC |
| GenBank Accession | AL759031 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:12965971 - go to primer design |
| BLAST e Value | 4e-41 |
| Hit Clone Code (BAC ID) | T6B20 |
| Hit Gene Code | At2g30424 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Homeodomain-like superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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