SimpleSearch - Line and FST details


Line specific information

 
Line ID 165G06
Vector Used pAC161
Line Availability available as T3 set from NASC (N415822)
Segregation Analysis 50:7:6
Confirmed for Hit At3g16040
Parent of DUPLO pair 1131
Parent of pair(s) none

Gene hit F21A20

 
Sequence (A. th genome BLAST matches underlined) 
>47-K013365-022-165-G06-8409
CTGATCCATGTAGATTCTCCCGCACATGAAGCCCTTTACAATTGAANTATATTCTCTAGC
TAAAAATTGGTGTTTCATTCGATCTCTAGGTTAGAGCTAATATAAAGCTGGGTGAGCATT
ATATATGTGCCACATTTATTGTTTACACTGGCAGAATCTTTCTATTAAATGTTTTTCCAT
TCAACGACAAAGCAATTTAATGGTTGTATTGTGTTGGGATTTTCTTCTGCCTATGGGATC
CTCCCTATAGTGACTAGATTATTATTTTTACCCATCAAAACCATGTCGCGATGTTGTAGA
AGTAGGTGTAGATCTAACACTTGCACCTCCTTCAAAAATCCTGCAACTTTTCATTGAGGT
TCTACTCGTTGCCCGTTTCAATCACACCACACGGCTCATATGCCCCACCCTTAACACAAA
ACAACCGATATTTTGAGACTCAAAACCACACACGATTACGACGTTTAGAAGCCCCCAAAA
AGCTTGCAGCTTC
GenBank Accession AL759114 [GenBank]
Graphic View Graphic view of sequence AL759114 of line 165G06
Predicted Position of Insertion Chr5:9638608 - go to primer design
BLAST e Value 8e-58
Hit Clone Code (BAC ID) F21A20
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g16040

 
Sequence (A. th genome BLAST matches underlined) 
>47-K013365-022-165-G06-8409
CTGATCCATGTAGATTCTCCCGCACATGAAGCCCTTTACAATTGAANTATATTCTCTAGC
TAAAAATTGGTGTTTCATTCGATCTCTAGGTTAGAGCTAATATAAAGCTGGGTGAGCATT
ATATATGTGCCACATTTATTGTTTACACTGGCAGAATCTTTCTATTAAATGTTTTTCCAT
TCAACGACAAAGCAATTTAATGGTTGTATTGTGTTGGGATTTTCTTCTGCCTATGGGATC
CTCCCTATAGTGACTAGATTATTATTTTTACCCATCAAAACCATGTCGCGATGTTGTAGA
AGTAGGTGTAGATCTAACACTTGCACCTCCTTCAAAAATCCTGCAACTTTTCATTGAGGT
TCTACTCGTTGCCCGTTTCAATCACACCACACGGCTCATATGCCCCACCCTTAACACAAA
ACAACCGATATTTTGAGACTCAAAACCACACACGATTACGACGTTTAGAAGCCCCCAAAA
AGCTTGCAGCTTC
GenBank Accession AL759114 [GenBank]
Graphic View Graphic view of gene At3g16040
Predicted Position of Insertion Chr3:5443677 - go to primer design
BLAST e Value 4e-44
Hit Clone Code (BAC ID) MSL1
Hit Gene Code At3g16040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Translation machinery associated TMA7
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37