SimpleSearch - Line and FST details
Line specific information
| Line ID | 166H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N415931) |
| Segregation Analysis | 100:99:95 |
| Confirmed for Hit | At5g19330 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12452 |
Gene hit At1g62835
| Sequence (A. th genome BLAST matches underlined) | >56-K013361-022-166-H07-8409 TGATCCATGTAGATTTCGCGTACATGAAGCACTTACAATATGATATAGTGCTGTCAGCTC ATTTACTGCTTTATTGGCTATGAGATCCTCCCTATAGTGAGAATGGCTGGGNGCGGCCAT TCACTCATGTATAATTTATACGTGCATACTATATATACATTGATTGTGCCATTCCTATGG GATCCTCGCTATAGTGAGCATATGCATATCATATTCGCATACGACCAACTTATGAAAAAT TAGATTTGCAAAATATTTAGTTTTCGAAATGGCGCAAAAGATAAGTGTTAGATAATCTAT GGGGGGGGGCGTATACCGCCCCCACCANNANNNNTTANGNNCGTNTGTTGGTTGGGTTGT CCGGGGCGGTGGAAAAAAAAAAAAAAAAAACGTTTGGCCCCGCGGGCCGGGGTCCTCCCG GCTGGGTCGGTGCCGTCCCTCCGCCGCGCGTTTTTCGCGAGCGGCCCGAAACCCACGCCC CGCCAATTGGGGCGGGAGGCCAGGTCCAAAAAATAGAGGGGCCGGCGTGCGCCGGAACGT CGGCCGAGAGAAAATAAACGCCATCCCGCGCACCGCGGGTTCCGGGGGCCCACGCCAACG GGGGAAGCCGGCCCGCTTTGTTCGATGCGTCCCACGACGCCGGTGGGAGAATTACCCACA TTTCGGCCGCCCTACATTTTTCGCCCCGCCGCCGGTTGGTACCGATACAACCACGGCCCG GCATTCCGCGCGATCCACGCCCCGGAATCCGGTTTCGAATAACATTGCGGGCGCCGCCGC GCACCAGAGTTTAAAACCGGGCCCATTGTCGCGCGCGTTCACTTCCGCCCCCCCCCGGTT CCACCCACGGGCCGGATGCGCGAAGACACGACGGGCGCGGTGGGGATGTCGGAAAACACC GAACGGCCGAATCCCCCGCCAGATCACCGGGATAATGTTAATAAATAAAACGA |
| GenBank Accession | AL759241 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23268930 - go to primer design |
| BLAST e Value | 2e-33 |
| Hit Clone Code (BAC ID) | F23N19 |
| Hit Gene Code | At1g62835 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL759241 [GenBank] |
Gene hit At5g19330
| Sequence (A. th genome BLAST matches underlined) | >56-K013366-022-166-H07-8409 TGATCCATGTAGATTTCCCNGACATGAAGCACTTTACAATTGAATATATCCTGATATACG GGGATCAGATTGTCATTTACTTTTTCTCCAAACTTCAGTATCCTGATTTCAGTAGAGGAA GAGTGGCAACGCCATACATACTTGAACAATAAACTCTCCATCCTGTAGCTTTTGGATACC TCCCACCCTGATAAAATCTGACACATTATCCTATGGGATCCTCCCTAGTAGTGACACAGA ACAATTGTTCNGTTCTTTCTGTTTTTATAACGACCCTATGGGATCCTCCCTATAGCGAGG GGCGGGCTGGCCACTCACCCATCCCCATGGTCATTACTTTGGATTTGACTTCCAAATAAT AACAAAGATCTGCCATAATAAAAATGTTAACCTGCTTTTACAATCCTACAGGCCAGCACA TCCTTATTAATTGACGTTGGGTTTTAAAGGGTATACACCGATCCTAAATTTTGAAGAAGT TGATGTTCCAATTTTCCGGGCAAGAATACATATATTGAGCACAAGAAAACTTTCGGAAGC CAAACC |
| GenBank Accession | AL759242 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:6509948 - go to primer design |
| BLAST e Value | 7e-52 |
| Hit Clone Code (BAC ID) | F7K24 |
| Hit Gene Code | At5g19330 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat protein interacting with ABF2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CT026148 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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