SimpleSearch - Line and FST details


Line specific information

 
Line ID 168E01
Vector Used pAC161
Line Availability available as T3 set from NASC (N416081)
Segregation Analysis 50:50:48
Confirmed for Hit At3g16340
Parent of DUPLO pair none
Parent of pair(s) 1136, 4367, 4392, 4443, 4697, 20776, 73614, 73615, 73616, 73617, 73618, 73619, 73620, 73621

Gene hit At4g22120

 
Sequence (A. th genome BLAST matches underlined) 
>05-K013363-022-168-E01-8409
TCGATCGTGATCCCATGTAGATTTCCCGACATGAAGCCATTTACATTTGATTATAAAGCC
CATTAATAATCAATTTCTTATAAAACGACCCCTAAATTTACGATGCACACATCTCACAAC
TCCAGAAACCTTATAAAATATCAACATCAACAAATCTTACTCAAATTTTCTCACTTTGGT
AGCTTCTCTTACTCTCTGTATACATTGAAAGTAGCATATGTATATATACTTTCTTTTGAC
CATGAGTGAAGCTTCTCTTAGACTAGTTTACCACTAATGGGCAAAGACGGCGAATCGTCC
CCACTGATTATGCTATGGGATCCTCCCTATAAGTGAGCCCCCCCCC
GenBank Accession AL770162 [GenBank]
Graphic View Graphic view of gene At4g22120
Predicted Position of Insertion Chr4:11715780 - go to primer design
BLAST e Value 2e-111
Hit Clone Code (BAC ID) F1N20
Hit Gene Code At4g22120 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ERD (early-responsive to dehydration stress) family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At3g16340

 
Sequence (A. th genome BLAST matches underlined) 
>05-K013368-022-168-E01-8409
TGCTTGAAGGGTTCATTGTTCCTATGGGATCCTCCCTATAGTGACAATATCAAACGAATT
ATTGTGTTGTCATTACTCTTTTTGACTATATATGATCTTTCTGAAACCTATGGAAATCTC
TATATGGTGGAAATGGGCTTACTGCGTTTCACCAATGGCTTACACTTACGATGCTTTAAC
TGTCAATGAAATGCTTGCTCCTATGGGATCCTCCCTATTTTTTTTTT
GenBank Accession AL770163 [GenBank]
Graphic View Graphic view of gene At3g16340
Predicted Position of Insertion Chr3:5543130 - go to primer design
BLAST e Value 4e-35
Hit Clone Code (BAC ID) T2O4
Hit Gene Code At3g16340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pleiotropic drug resistance 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37