SimpleSearch - Line and FST details
Line specific information
| Line ID | 169A01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416129) |
| Segregation Analysis | 50:7:5 |
| Confirmed for Hit | At5g59390 |
| Parent of DUPLO pair | 11875 |
| Parent of pair(s) | none |
Gene hit At3g06365
| Sequence (A. th genome BLAST matches underlined) | >01-K013446-022-169-A01-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTTCGCTCGACTATCATTTCTTTTTCTTTTTCTCCATATTGGCAGCCAAGCGT TCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGT CGTGAGACAGGTTAGTTTTACCCTACTGATGCCCGCGTCGCGATAGTAATTCAACCTATG GGATCCTCCCTATAGTGAGCAGTTTNACTCAACNNNCNCTCGNCNTCCACGCCCAAGGGG GGGCTCACACGAGAACCCGCACGAGGGGGGCCGCGATTGCCCCACACCCAGAACCCCCGG AGGCCCCCAGATAGGCCGGAGATTGGGCAACAAGGCCCCCCCGTAGGGAAAAACGCCCGA CCGCGGGGGCCACCGCCACCGGGGGGGCCGCAACGCCCCATAGTCGGCCCCCGCGCCCGG GCATCCAGCCCCGGGGCCGCGAAACGCGCCCGCCGGACCCGCCCGCCCCGCGAAAAAGAC CCCCGTGCGGCGGCGCGGGCAACCGCGCGGCGCAAGCGGGGGAGAAAAGAGG |
| GenBank Accession | AL770214 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14202923 - go to primer design |
| BLAST e Value | 2e-104 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR804904 [GenBank] |
Gene hit F28G4
| Sequence (A. th genome BLAST matches underlined) | >01-K028789-022-169-A01-8409 ATTTCTTTTCCCTTGAGGAACCGGAANANGAAATTANATTGGTTTANATG |
| GenBank Accession | CR934828 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:5945292 - go to primer design |
| BLAST e Value | 6e-11 |
| Hit Clone Code (BAC ID) | F28G4 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g59390
| Sequence (A. th genome BLAST matches underlined) | >01-K013387-022-169-A01-8409 CTGATCCATTGTAGATTTCCCGCACATGAAGCCTTTACAATTGAATATATCCCGACACCT ATATGGGATCTCTCCCTATATGAGAGTCGTATTACTACATGCCGATACATAATACAGGTC TCCAACATGATTTAAGCTTCACATAAATTACCATCTCACTACTCCATCCTGATCTACTAT GGGATCCTCCCTATCTTGAGTCAACAACTCATCTGTTGCTTCCTCCATCGTCGCCTTTCG GTTTTCCTCATAGTTCCAAAGCTCTAAAATCACATAGCTGCCACTATGGGATCCTCCCTA TAGTGAGTCGCGTTACTC |
| GenBank Accession | AL770213 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:23957095 - go to primer design |
| BLAST e Value | 2e-36 |
| Hit Clone Code (BAC ID) | F2O15 |
| Hit Gene Code | At5g59390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | XH/XS domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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