SimpleSearch - Line and FST details


Line specific information

 
Line ID 171B03
Vector Used pAC161
Line Availability available as T3 set from NASC (N416335)
Segregation Analysis 50:49:35
Confirmed for Hit At5g61000
Parent of DUPLO pair 2258
Parent of pair(s) none

Gene hit F17D23

 
Sequence (A. th genome BLAST matches underlined) 
>18-K013468-022-171-B03-8409
CTGATCCATGTAGATTTACACGGACATGAACGCCTTTACAATTGAATATCTGCTGAATGA
TGAATGTTTATCACGGCGAGAAGAGACAGAGGGTCACTGTGTAGGTACTCCTCCTCTCTG
TTTAGCTGCTGAAACAGATGGTTGCTTACGACCTCTCCACAGGATCAGGCCATCCTACCA
GACGCTGTTACTTCTTTCTTTTTCTTTATTGGCCTAAAAAAGTCTCATAACCTTTCCTTG
TATACACTAAGCCTTACCGCTATTTATAAAATACGGGTTCCCGTTACAATAGGCCCTTTA
CCTTGTCATCAAGCCCTCCTTTTTGGTTTCTTTAACAGGATTAACTTGCGATCTTTTTTG
TTGTACCAGCTGACACACCATAAATAGTGGCGTATTTGGCGACGATCCCTTTTCCTCGCC
CACTGTAATTTGTGAAAGCTATGGGGGCGTCCTTAAGGGGCGTAATGATATTTGAGTAAG
GAGCTTCTTACAGGGAAAAACTACTTTAGCTTCCCTAAACCCTAAACCCTAGATGCTCAA
CCCTTACCTTAAACCCTAAACCTGGAATCCTAATTTATATTTCCAGATCTA
GenBank Accession CR770266 [GenBank]
Graphic View Graphic view of sequence CR770266 of line 171B03
Predicted Position of Insertion Chr4:3252843 - go to primer design
BLAST e Value 3e-51
Hit Clone Code (BAC ID) F17D23
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g61000

 
Sequence (A. th genome BLAST matches underlined) 
>18-K013468-022-171-B03-8409
CTGATCCATGTAGATTTACACGGACATGAACGCCTTTACAATTGAATATCTGCTGAATGA
TGAATGTTTATCACGGCGAGAAGAGACAGAGGGTCACTGTGTAGGTACTCCTCCTCTCTG
TTTAGCTGCTGAAACAGATGGTTGCTTACGACCTCTCCACAGGATCAGGCCATCCTACCA
GACGCTGTTACTTCTTTCTTTTTCTTTATTGGCCTAAAAAAGTCTCATAACCTTTCCTTG
TATACACTAAGCCTTACCGCTATTTATAAAATACGGGTTCCCGTTACAATAGGCCCTTTA
CCTTGTCATCAAGCCCTCCTTTTTGGTTTCTTTAACAGGATTAACTTGCGATCTTTTTTG
TTGTACCAGCTGACACACCATAAATAGTGGCGTATTTGGCGACGATCCCTTTTCCTCGCC
CACTGTAATTTGTGAAAGCTATGGGGGCGTCCTTAAGGGGCGTAATGATATTTGAGTAAG
GAGCTTCTTACAGGGAAAAACTACTTTAGCTTCCCTAAACCCTAAACCCTAGATGCTCAA
CCCTTACCTTAAACCCTAAACCTGGAATCCTAATTTATATTTCCAGATCTA
GenBank Accession CR770266 [GenBank]
Graphic View Graphic view of gene At5g61000
Predicted Position of Insertion Chr5:24549804 - go to primer design
BLAST e Value 1e-16
Hit Clone Code (BAC ID) MSL3
Hit Gene Code At5g61000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Replication factor-A protein 1-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37