SimpleSearch - Line and FST details
Line specific information
| Line ID | 171C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416355) |
| Segregation Analysis | 50:16:13 |
| Confirmed for Hit | At5g16030 |
| Parent of DUPLO pair | 985 |
| Parent of pair(s) | none |
Gene hit At5g16030
| Sequence (A. th genome BLAST matches underlined) | >83-K013466-022-171-C11-8409 TTGATCCATGTAGATTNTCCCGTACATGAAGCACTTTACAGTTGAATATACACTAGTTGA AACTAACGCTTACGCTTACTACTAGAATAATAATAAACCAACAACGCCCGTAGCCGTATA GGTCTATTTTGTCCTATGGGATCCTCCCTATACGTGCTTCGAGAAACCTAAGAAAAAATC TAAAAGATGGGACAGAGTTAAAGGCAATCACCTATGGGATCCTCCCTATAGAGATGGGTA CTACAGAACATATGCAGGGTGGCTGATGCACTATGGACCCCATAATATCGACTAGATGAA ATTTAACTGTTCATACTAACCTAATTTCAGTTGATTTTCAATATATTATTGAGTTAAAAC AGTTAGAATCATTTGAAAGAGAAATATTGTTTCAGAAAACCGTCCATTAAAGTTTTTACC CTATTGTATTGATGTGTCATATTGGTCTGATTTTAACGGATGTATTGAGACAGTACACAA AAGCAGTAAACAACCCTCACGTGTTCTCTTTAGTTTTTACCTATGGGATCCTCCTA |
| GenBank Accession | AL770424 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5239150 - go to primer design |
| BLAST e Value | 3e-17 |
| Hit Clone Code (BAC ID) | F1N13 |
| Hit Gene Code | At5g16030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | mental retardation GTPase activating protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g03900
| Sequence (A. th genome BLAST matches underlined) | >83-K013468-022-171-C11-8409 TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATATACTTAAGGGTA ATCTTGCTTAACCTTATAGAATACAATAAGCGTCGTGGATAGACTTTGTTTATTTACCTT GAGCTGATATCGATCAGATATGAGGCTCGCTCCTGCGTGATTCCTTGCATCCATCAGATG CATTCCTTGAAGCGACTGGATCGTTTGGAGGAGGAGGTCAAGGAGACTCTGGTTACTCCG GCAGCTTTGGGGGGTGGGGCGGGTGC |
| GenBank Accession | AL770425 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:992750 - go to primer design |
| BLAST e Value | 8e-55 |
| Hit Clone Code (BAC ID) | F21M11 |
| Hit Gene Code | At1g03900 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | non-intrinsic ABC protein 4 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit T31P16
| Sequence (A. th genome BLAST matches underlined) | >83-K013466-022-171-C11-8409 TTGATCCATGTAGATTNTCCCGTACATGAAGCACTTTACAGTTGAATATACACTAGTTGA AACTAACGCTTACGCTTACTACTAGAATAATAATAAACCAACAACGCCCGTAGCCGTATA GGTCTATTTTGTCCTATGGGATCCTCCCTATACGTGCTTCGAGAAACCTAAGAAAAAATC TAAAAGATGGGACAGAGTTAAAGGCAATCACCTATGGGATCCTCCCTATAGAGATGGGTA CTACAGAACATATGCAGGGTGGCTGATGCACTATGGACCCCATAATATCGACTAGATGAA ATTTAACTGTTCATACTAACCTAATTTCAGTTGATTTTCAATATATTATTGAGTTAAAAC AGTTAGAATCATTTGAAAGAGAAATATTGTTTCAGAAAACCGTCCATTAAAGTTTTTACC CTATTGTATTGATGTGTCATATTGGTCTGATTTTAACGGATGTATTGAGACAGTACACAA AAGCAGTAAACAACCCTCACGTGTTCTCTTTAGTTTTTACCTATGGGATCCTCCTA |
| GenBank Accession | AL770424 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:3184973 - go to primer design |
| BLAST e Value | 7e-126 |
| Hit Clone Code (BAC ID) | T31P16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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