SimpleSearch - Line and FST details


Line specific information

 
Line ID 172G10
Vector Used pAC161
Line Availability available as T3 set from NASC (N416498)
Segregation Analysis 50:39:30
Confirmed for Hit At2g02060
Parent of DUPLO pair 11732
Parent of pair(s) none
Note

Gene hit At2g02060

 
Sequence (A. th genome BLAST matches underlined) 
>79-K013469-022-172-G10-8409
NTTGATCCATGTAGATTNTCCCGGTACATGAAGCCTTTACAATTGAATATATCCTGAATA
CAAATGTCACTATTACTCTTGAAAAATATACCTGTCATACAATTGTATCATTGCTCAAAC
TGTCACTATTACTCTTGAAAAATATATAAATGTATTTATGACATTTGTCTTATGAATCAT
GACGCTATGGGATCCTCCCTTAAGTGAGACCTATAGTGAGTTTTTCAAACTTTATTCT
GenBank Accession AL770584 [GenBank]
Graphic View Graphic view of gene At2g02060
Predicted Position of Insertion Chr2:496779 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) F14H20
Hit Gene Code At2g02060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Homeodomain-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g01008

 
Sequence (A. th genome BLAST matches underlined) 
>79-K013458-022-172-G10-8409
NTTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGAATA
CAAATGTCACTACTTACTCTTGAACAAATACATGCTATACAATTGTATATTTGCTCAAAT
CTGTCACTATGAGCTCTTGAAAAATATTGAATGTATTCATGACATTGTGCCTGTATGAAC
CATGACACTATGGGATCCTCCATAGTAATGGGATCCTCCCTATAGTGAATGGGCATCTAC
ACCTTGCGGCTTGGAACTGGAACGAGACGGGTGGCAAAGATTTCCAGTAGCACTTCATAC
TACCGTGGGTTTTATAAACCTTCCGAGTTTTGCTGATGTTATTCCGAGAATTAGCACACC
GTAACGAAGATGTTCTTGGCAACCATCTTTTGATGGGAGTCCGGCTGTTCGATAGCCGGC
CAAGGGTGATGAACGAAATGTGAACCCTTGTCTCGCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL770583 [GenBank]
Graphic View Graphic view of gene At2g01008
Predicted Position of Insertion Chr2:2376 - go to primer design
BLAST e Value 4e-106
Hit Clone Code (BAC ID) F23H14
Hit Gene Code At2g01008 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation maternal effect embryo arrest protein
Insertion Classification TS2TE (3')
Confirmation Status failed


Last Updated on 10.06.2021 13:37