SimpleSearch - Line and FST details
Line specific information
| Line ID | 174D04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416648) |
| Segregation Analysis | 49:27:22 |
| Confirmed for Hit | At4g30800 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2970, 6922 |
| Note |
Gene hit At4g21490
| Sequence (A. th genome BLAST matches underlined) | >28-K013531-022-174-D04-8409 CTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACATTCGATGTCATGATGGCGGGT ATTGAGATTGCTGCGGACACGGAAGACGGTCTCGACAATGACTAGTCTATCTACTTGGGT GTCGACGCTGGTGTCACACTCACTTGCCGTGAGACTCTGGCGACGACTTCTAAACACAAC AAAACTGAAGCTGAAGAGAGAGATATTGATGCCCCTATATACATTGGTGAAAGATTATGA GCGCGGTGATCTGGCATTTCTCTCTGATATCTGATGGGGGAGGTATCCTCCCTATAGAGG CATACCCTGGATAGTACAACAAAGGCGTTGAAGCTGAAACGGGGAAGACTAAGGTATTGC TGCTCGGAACTGGATGGGCTGGAGCAAGTTTTTTGAAGACTCTGAATAACTCTTCTTATG AGGTACAAGTTATATCTCCTCGAAACTACTTTGCTTTCACTCCCTTGTTACCTATGGGAT CCTCATATAAGGGAGGACGCGACGATGCATCACGCTCTCTCCCACTCGCATGGAGGATCC CGTCCCTCCGACGCGGGCAGACGGGAGCCGAGGAATGAACTGCACCCCACCCCGTTTTAC TGCCCCCCACCCCCCCATTATCTGTTCTATTCGCCGGCGACGCCCCCGCACCCTAATAAC CAGGGGGGAATACCCCACATCGGGGCACCCTTTCTCCGCGGCCGGGGGGCCCCCCTGCGG GGGACACATCGCTTCGGTTTATTTATTAGGAAAGGGGAAATGGTGAAGA |
| GenBank Accession | AL770744 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:11439117 - go to primer design |
| BLAST e Value | 4e-53 |
| Hit Clone Code (BAC ID) | F18E5 |
| Hit Gene Code | At4g21490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAD(P)H dehydrogenase B3 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 174D05 |
Gene hit At4g30800
| Sequence (A. th genome BLAST matches underlined) | >28-K013516-022-174-D04-8409 CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACATGCGAGTGTGTCCGAATGTA TTTTATTGACCGTTGGGGAGTGCAAATTACGATCTCTAATAGTTTATATACTTGGTTGTT CGGTCAAAGGAATTCATGCAGTATGTATAACACTGCCTGAACTTTGATACCTTCTTTTTT GATCCCGCATGTCGCTAAGCTGATCGAGCCTACGATCCATGCTATTGACCAACACGGTGA GGCTCATGTGTACTGACGGACATTACGGGATGGAAGCTGTGCTATCGGACAAAAAGCGGG ACCTGGAATGTAAAAGAGAGTCACCATGCGATGAAAAGGTGCGAGCTCTGGGATCCTCCC ATAATTGAGCCCAAAGCTCCTAAAATTGGGCAAATACCACCAATCTACTACCCAAGTCTT AGATCAATGAGAATACTAACAAAGCGGCATTACTCTAAAATCAGATTACTCAGAAAATGT CTCAACAACCAAATTAGAGACACTAAACCAAAATCCTCTAAGTTCTCTAAAGAATCCAAC TTTTTTAACAAATGAAGCGTCTTCTATGGGATCCTC |
| GenBank Accession | AL770743 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:15002118 - go to primer design |
| BLAST e Value | 5e-105 |
| Hit Clone Code (BAC ID) | T10C21 |
| Hit Gene Code | At4g30800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Nucleic acid-binding, OB-fold-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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