SimpleSearch - Line and FST details


Line specific information

 
Line ID 175D03
Vector Used pAC161
Line Availability available as T3 set from NASC (N416743)
Segregation Analysis 50:47:47
Confirmed for Hit At2g34840
Parent of DUPLO pair 873
Parent of pair(s) none

Gene hit At2g34840

 
Sequence (A. th genome BLAST matches underlined) 
>20-K013532-022-175-D03-8409
TGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGGCTTCAT
CAATCTGTTGCATCACTCTAAGCTGCTTCTCAGCATACTCTGCTCTATGCATCTTAATGA
ATATCTGAACATTCAAGGCATACCTATGGGATCCTCCATATAGTGAAGGCGCACACACAC
AATATTTTTTTGTAAATCTCCAAACTCATAACTTCATAAAGGGCGACAAGATCATGTATA
AGTTACACACTTAAGCCTATGGGATCCTCCCTATAGTGAGNNGNCGGCCCCCCCCCCCCC
CCGTGTTCCNTCATATCGCCCGAATCGCCATTAACCATATTCCTAAAACCACACTAACAA
GCACTCGATCAACGCATTTAACCCCCCCAATCCCGCCCCCTATTCTGACAACCCCCAAAT
CCATACGCGCGCCCCGAAAAAACTACAAAAAAAACACGCGGCCGCCGTCACCCGTTTCAC
CAAAAAAATACGCCACAAACTATATTCACCCCCCCCCCCCGCTCACAATAAATATATATT
CCGAGATAATGCAACAACACCCAAACCAACTCTACCATATTAACCACCGCCCCATATCCC
CCACCAATCCCACCACTCCGCGAAAACGTCCATTATCTACCATATATATATATTCCCCTC
GCGTCATAATACGAACCTTCTCCCAATATTTTTT
GenBank Accession AL770860 [GenBank]
Graphic View Graphic view of gene At2g34840
Predicted Position of Insertion Chr2:14703375 - go to primer design
BLAST e Value 1e-44
Hit Clone Code (BAC ID) F19I3
Hit Gene Code At2g34840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Coatomer epsilon subunit
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g30000

 
Sequence (A. th genome BLAST matches underlined) 
>20-K013517-022-175-D03-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGGTAATTATGGTTTACA
TTCTAATAAACCTTTAAATTTGAGATCATTTGGTCATCTTAGCTCTTTGTAATCTGCAAG
GTGTTGCATAGAACATAATCGACTTGAAGTATGTATGAAGACCAAATTAGGCGCACACAC
ACAATATTTTTTTGTAAATCTCCAAACTCATAACTTCATAAAGGGCGACAAGATCATGTA
TAAGTTACACACTTAAGTCTATGGGATCCTC
GenBank Accession AL770859 [GenBank]
Graphic View Graphic view of gene At1g30000
Predicted Position of Insertion Chr1:10509180 - go to primer design
BLAST e Value 5e-96
Hit Clone Code (BAC ID) T1P2
Hit Gene Code At1g30000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alpha-mannosidase 3
Insertion Classification TS2TE (3')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37