SimpleSearch - Line and FST details


Line specific information

 
Line ID 176A08
Vector Used pAC161
Line Availability available as T3 set from NASC (N416808)
Segregation Analysis 50:50:47
Confirmed for Hit At1g29050
Parent of DUPLO pair none
Parent of pair(s) 282, 5150, 5181, 5199, 80791, 80796

Gene hit At1g29050

 
Sequence (A. th genome BLAST matches underlined) 
>57-K013518-022-176-A08-8409
NTGATCCATGTAGAATTTCCCGGACATTGAAGCCTTTACAATTGAATTTGAAGCAAAGGC
CTGCTCGACTCCCGACAGATTGTGACTGTTATAAGTGGAAGAAAAAGAAGGAGGAGAGAG
ATGAGTTTGAAACCCATCTTTGTAAAATTACACAAATATCAAAGGTTTTGGGTTTTTGTG
ATGAATCTTGTTCGATTGGGTTCAAGCTTTTATACACTCATTTGTGTATGTATATATGCA
CTAATGCATGTACATACATATAATTATGATAAAAAGTTTCTGTGCATATTTCTTATTGTG
ATTAAATAATACTTATATTTTAATGTACACAATTATGTCAATTATGAAACCCAAGCTATG
GGATCCTCC
GenBank Accession AL770941 [GenBank]
Graphic View Graphic view of gene At1g29050
Predicted Position of Insertion Chr1:10138994 - go to primer design
BLAST e Value 1e-155
Hit Clone Code (BAC ID) F28N24
Hit Gene Code At1g29050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TRICHOME BIREFRINGENCE-LIKE 38
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MFC19

 
Sequence (A. th genome BLAST matches underlined) 
>57-K013533-022-176-A08-8409
CTGATCCATGTAGAATTTCCCGCGACATGAAGCCTTTACAATTGAATATATCCTATGGTT
AAGAGAACTATAAAATGATTTTCTACATAGCATTGACTATAGACAAGTTGTATCGTGGAG
AAGATAATGAGTTTTAACAGTTCATCATAAACGTTTAATTGTCAACTAATAAAGGTCCGT
ATGGACTATGGACCATATATGATTGAACTAAAAACAAATAATTTTGATAGGTCATATCAA
GATTCAAGAAAGTGGTTTAAGTCGACTGTTTAAACGCCTATGGGATCCTCCCTTTAGTGA
GenBank Accession AL770942 [GenBank]
Graphic View Graphic view of sequence AL770942 of line 176A08
Predicted Position of Insertion Chr5:18437463 - go to primer design
BLAST e Value 7e-126
Hit Clone Code (BAC ID) MFC19
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37