SimpleSearch - Line and FST details


Line specific information

 
Line ID 176C11
Vector Used pAC161
Line Availability available as T3 set from NASC (N416835)
Segregation Analysis 100:94:93
Confirmed for Hit At4g21040
Parent of DUPLO pair none
Parent of pair(s) 84517, 84518

Gene hit At2g25500

 
Sequence (A. th genome BLAST matches underlined) 
>83-K013518-022-176-C11-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATCTTTAAGGTTG
CTGGAGGTTTGATGCTTGAGCGTCCCCTTATTATACCTTTTATTGATTCCGAGGTGGGAG
GTGTAGATACCGCCATGAGACTTTACTAAAGAACTCATCTGAAAAATTATTAACGATGTG
TGGTAGGCTTGTAGCTCAAGTACATTTTGTCAAAAAGTACATGACCACTCTGCAAAAAAT
GATTTGTTAAAGTGTACAATGTCTTGAGAAACCGTGGACGACTACATTTTTTAAAGAAAA
AGTTGCATGTCATGAAGTTGATGATAATGATGCTATGGGATCCTCCCTTAAGAAGAGGAT
CGNCTATGGGATCCTCC
GenBank Accession AL770974 [GenBank]
Graphic View Graphic view of gene At2g25500
Predicted Position of Insertion Chr2:10854459 - go to primer design
BLAST e Value 4e-118
Hit Clone Code (BAC ID) F13B15
Hit Gene Code At2g25500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Inosine triphosphate pyrophosphatase family protein
Insertion Classification 3' region
Confirmation Status unknown

Gene hit At4g21040

 
Sequence (A. th genome BLAST matches underlined) 
>83-K013533-022-176-C11-8409
CTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATTTCGTAATTTACA
ATTTTGTTACTGGACTCATGGTGGGGCTTTAAGAAACGTACCAATTGGTGGGAGTAGTCG
TGCCAAGCGGACAAGGATAAATCAACCTTCAGTTGCTCAGATGGTTTCTGTTGGAATCCA
ACCAGGTAGCCATAAACCTTTCTTTAATGTTCAAGAAAATAATGACTTTGTTGGATCTTT
TGGTGCTTCATCTTCATCTTTTGTTGCTGCTGTAGGGAACCGTTTTAGTTCTTTGTCTCA
TATTCATGGTGGTATGGTAACAAATGTGCATCCAACTCAAACTTTTCGACCAAATCATCG
CCTATGGGATCCTC
GenBank Accession BX546569 [GenBank]
Graphic View Graphic view of gene At4g21040
Predicted Position of Insertion Chr4:11235343 - go to primer design
BLAST e Value 5e-167
Hit Clone Code (BAC ID) T13K14
Hit Gene Code At4g21040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Dof-type zinc finger domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37