SimpleSearch - Line and FST details


Line specific information

 
Line ID 177D02
Vector Used pAC161
Line Availability available as T3 set from NASC (N416934)
Segregation Analysis 50:20:17
Confirmed for Hit At4g34870
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At4g34870

 
Sequence (A. th genome BLAST matches underlined) 
>12-K013534-022-177-D02-8409
NNNTTTTGATCCTGTAGATTTCCCGGAATGAAGCCTTGTTGACATGGTTTTTCTCCAAAA
CCCTAATTTGTCATATCACTTTACAATCTTACTTATCGATTTCTCTCTTCCAATCTCCCA
AAAGATGTCGAACCCTATGGGATCCTCCTTATGAGTGAGGGTAGAGCTGTGATGATATGG
AAATTAACCGTGGTTGAATCGGATCTGACTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL771106 [GenBank]
Graphic View Graphic view of gene At4g34870
Predicted Position of Insertion Chr4:16614392 - go to primer design
BLAST e Value 3e-20
Hit Clone Code (BAC ID) F11I11
Hit Gene Code At4g34870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation rotamase cyclophilin 5
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g01640

 
Sequence (A. th genome BLAST matches underlined) 
>12-K013519-022-177-D02-8409
AGAAGGATCTATGGGATCCTCCGTTTTGAGAGATCAAATTACACAAGTTTTGATCTGTAA
CAAACTCGTTTACAGCTTTCCTTTAAGAACACAGTCTCGCCTGTGAGATCTCTCTATGCA
GATTTATGTGATACAGGTCTCATGCTTGAGATTGATGAGTAGTAATCTATGGGATCCT
GenBank Accession AL771105 [GenBank]
Graphic View Graphic view of gene At2g01640
Predicted Position of Insertion Chr2:283911 - go to primer design
BLAST e Value 6e-71
Hit Clone Code (BAC ID) T8O11
Hit Gene Code At2g01640 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ribosome biogenesis protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37