SimpleSearch - Line and FST details


Line specific information

 
Line ID 177E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N416948)
Segregation Analysis 50:31:31
Confirmed for Hit At4g11990
Parent of DUPLO pair none
Parent of pair(s) 12119

Gene hit At1g06960

 
Sequence (A. th genome BLAST matches underlined) 
>29-K013519-022-177-E04-8409
NNNNCCTGATCCTGTAGATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAAAAT
AAGTATATATGAAAGACTGACACATAGACGAGTTCCCATATTCTTTTAGATAGCTGAATT
CTCGAACACGTATAGTTGCCTACGTGTATGGCACCAGATCCTGAATTTTTTAACGCTATG
GGATCCTCCCTCTAGTGAGCNTTCCGTACCGCCCTATCGACACACCCCTGTCCTTCGCCA
CGATACCGTATCGTGGGCCGAGGTCTACTGATGGGGACCTAACCCCTACGAGGCTTGTTA
GTTGCAGCGCCTGCCCGGATCTTTCCGATGAGAGGGAACGCGGAATCCCTGACTCGGCCC
CGCCTTTGACGCTCCAAACTCACCTTCGCCCCGGGCTCCTCTTAGGAGTGTACTTGCTAC
CTACTTTACCTCACCGGGCGTCCAAGTCTGAGGGTCTATCTCGCCGGCGTTTTCGATGTT
CGTTCCCTCGCAGCGCAGGTGCTTCCTCCGACCAACTATCAGTATCTACCCACGCGCAGA
ATCCCGGTATACATGGGAATGAGACGGAGCTCACTGGATTGCAGCCGGTTGGTGGACAAA
ACGACACCGCCGG
GenBank Accession FR805083 [GenBank]
Graphic View Graphic view of gene At1g06960
Predicted Position of Insertion Chr1:2135846 - go to primer design
BLAST e Value 3e-48
Hit Clone Code (BAC ID) F10K1
Hit Gene Code At1g06960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA-binding (RRM/RBD/RNP motifs) family protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At4g11990

 
Sequence (A. th genome BLAST matches underlined) 
>29-K013534-022-177-E04-8409
CTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAAAAT
AAAGTATATTATGAAAGACATGAAAATAAAGTAGTTCCCATATTCTTTTAGATAGTATGA
ATTTTGAAAATGTATAGTTGCATACGTTTATGGCACCACATCATGAATTTTATTAACACT
ATGGGAGCCTCCCGTNAGCGAGTGCAATGAAACTGTTAATGATACAAGAGGTTTATGATG
AAAAGACCGAGTCTTTGTCAAAATCAGATGATGGGGAACTCACAGTAGAAGTTCAGGAGA
GTGACAGAGAAATCCCTCAGCAACCAGATGTGAATGAAACAGGTGAATTTAGGATGTTTC
GGATTATGATTCTAGATCACTAAACTA
GenBank Accession AL771120 [GenBank]
Graphic View Graphic view of gene At4g11990
Predicted Position of Insertion Chr4:7189303 - go to primer design
BLAST e Value 2e-83
Hit Clone Code (BAC ID) F16J13
Hit Gene Code At4g11990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cell cycle regulated microtubule associated protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37