SimpleSearch - Line and FST details


Line specific information

 
Line ID 179A06
Vector Used pAC161
Line Availability available as T3 set from NASC (N417094)
Segregation Analysis 50:50:39
Confirmed for Hit At1g71360
Parent of DUPLO pair 12338
Parent of pair(s) none

Gene hit At1g71360

 
Sequence (A. th genome BLAST matches underlined) 
>41-K013563-022-179-A06-8409
CTGATCATGTAGATTTCCCGGACTGAAGCACTTACATTGAAATATCCTGCACCTTGAGTT
TATTGTCTTTAATAGTGATAATAGGGATTTCTCCTATAGAATATCTCCAGGAATATTCAA
TTGTATAAACGACATTGCTGGCCATAGACTACTATGGGATCCTCCATATAGTGAGACAGC
GATAAAGGCGGCAGATCACAGAAGGACAAGGAACAACAAGCCGCGCCACAGAATGCGGTT
GTGAAAGAGCACTCTTCAGTGGAGAACATAACGCTGACCGAATCGGTGGAAGACATACTC
CTTTACCGAGAAGCAGAGCGCCGTGGGACACTAGGCTGAAGATACTGATGCAGAAGATAA
GGACGCTGGACGAGAGCATATCAGGTCTAGAGAGTCACTAGGAGGACCGGACCTTGAAAT
ACAGGAGGAGATCTTCGGAGATGGACCTGGAGGCGACCAATAGAGAGAAGGA
GenBank Accession FR805115 [GenBank]
Graphic View Graphic view of gene At1g71360
Predicted Position of Insertion Chr1:26892976 - go to primer design
BLAST e Value 5e-28
Hit Clone Code (BAC ID) F3I17
Hit Gene Code At1g71360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose-binding protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g20540

 
Sequence (A. th genome BLAST matches underlined) 
>41-K104550-0022-179-A06-8409
CGGACATNAGCCATTTACAATTGAAATATCCTGCACCTTGAGTTTATTGTCTTTCAATAG
TGATAATAGTGATTTCTCCATATTGAATTTCCAGGATATATTCAATTGTATAAACGACAT
TGCTGGCCATAGACTTCTATGGGATCCTCCCTATAGTGAGAAAGTTAGTANCAAACTTAT
CAAACACATTCTATGGGATCCTCCCTATAGTGAGCACNCNNTTNTTATAAAATGAAATTC
CTTTTTGATAAAACAACAAATGAAGATCCCTCGTATTTATAGGCAAAAGCAATAAACAAA
TTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACGTTCACGTCAAAATGG
GenBank Accession FR805116 [GenBank]
Graphic View Graphic view of gene At5g20540
Predicted Position of Insertion Chr5:6949772 - go to primer design
BLAST e Value 7e-05
Hit Clone Code (BAC ID) F7C8
Hit Gene Code At5g20540 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation BREVIS RADIX-like 4
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37