SimpleSearch - Line and FST details


Line specific information

 
Line ID 179F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N417154)
Segregation Analysis 50:49:37
Confirmed for Hit At4g14700
Parent of DUPLO pair none
Parent of pair(s) 12016
Note

Gene hit At1g74360

 
Sequence (A. th genome BLAST matches underlined) 
>46-K104550-0022-179-F06-8409
CCCGGACATAAGCCATTTACAATGANTATTCCCTGGAGGTAAATACATTGGCAATCACAA
TCTTCACAGGGAAGGCACTTAACCTGAGATGGAGTTCAAAGCTGAGCTGGAACTTCTAAG
TGCCAACCCATTTGGAGATTGGGCACATCCGAACCTCGTGAGGCTATATGGATGGTGTCT
ATGGGATCCTCCCTATAGTGAGAGGGGAAATGACCCGATCGATCTTCCGTGAAAAGAACC
AGTCAAATAAATCAGTCTAATTCAAAAAGGTATGGGTTCCTCCCTAGCTTGAGTGACGTC
AGATCGTGCCACATCCCTGGATACAACTGGAGCGTCTTGTCCCTTGTGCTATGGGATCCT
CCCTATAGTGAG
GenBank Accession FR805207 [GenBank]
Graphic View Graphic view of gene At1g74360
Predicted Position of Insertion Chr1:27957090 - go to primer design
BLAST e Value 2e-30
Hit Clone Code (BAC ID) F1M20
Hit Gene Code At1g74360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 179E06

Gene hit At4g14700

 
Sequence (A. th genome BLAST matches underlined) 
>46-K013563-022-179-F06-8409
CTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGGACAT
GAGTTCCAAGGCAAAAACCTTCAAATCCCCAACCAAAACTCCAACTAAAATGTATCGCAA
ATCGTATCTATCTCCATCTTCAACTTCACTCACTCCTCCTCAAACCCCAGAAACTCTCAC
TCCTCTTCGTAGATCTTCTCGTCACGTTTCCCGTAAAATCAATCTGGGAAATGACCCAAT
CGATCTTCCAGGAAAAGAATCAGTCGAAGAAATCAATCTAATTCGAAAACCTAGGGCGGC
CTTGCT
GenBank Accession AL771375 [GenBank]
Graphic View Graphic view of gene At4g14700
Predicted Position of Insertion Chr4:8422248 - go to primer design
BLAST e Value 5e-130
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g14700 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation origin recognition complex 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR805208 [GenBank]


Last Updated on 10.06.2021 13:37