SimpleSearch - Line and FST details


Line specific information

 
Line ID 179H08
Vector Used pAC161
Line Availability available as T3 set from NASC (N417180)
Segregation Analysis 50:49:38
Confirmed for Hit At2g30370
Parent of DUPLO pair none
Parent of pair(s) 3016, 6952

Gene hit At1g47570

 
Sequence (A. th genome BLAST matches underlined) 
>64-K104551-0022-179-H08-8409
CGGACAAGAAGCCATTTACAATTNAATATATGCGTGCTGAGCATATTGGAAGGTCAGTGT
TCTGATCTCCGAACTTGGAATGATCACCCTTCCCACTGGGATCCTCCCTGCTGTGAGATA
GGGGAACCGCCGGATCCTCCGAATACTGAGACCAGCATGATCTTCGGGGTGGTGTTGTGT
CCTACGTGCGTATCCATACCAGCAATCTTCCCTATGGGATCCTCCCTATACTGAGACTAA
GGGATCCTCCAAATATTGAGACCCAGGGGGGAACCAACTCTACACTCTCTTGTGACAGAA
GCCAGACAGCGAGAGTTAAATATGGCATCTTGCCTATATGTAGGGGTAAGATATTTCTTA
ACATATATGATATTATTTTTATTCTCGCCCGAGTTTTTTAAAACTTGCGCTGTTTTCATA
TCTTCCTACATCTTACTCGCTTTTAACTCGTGGTACTATATCTATAAACCGGGCTATACT
ATTTTTTTATATAATTAGTTTTATTTCAAGGAACTCACTCTCTTTATTTACCAAGTTCTT
TGCGATTTTTCATTTTTCACCTTTATAATTATTCTCAAAAATTGTAATTATCTCAATAGC
GTGTTTTTGGTTTTATAAACTATAACAGACGTTAATGTCACTTATTACATATATATACGC
AATCCACCGTACGCTTCTTTTTATAGACACATATTTGATAAGTATAAATTATGCAAGATC
TACGTCAGACCCTATATATATCGCGATTGATCCACCATTTGTGTATCGCTATCCCACCCC
CAATATTTTATTCATATATATTTTAATCTAAATTCTCTCGCCTCTTATATTGTTTTCTGA
TTTTTATGCGAATATATAAATTAGTCGTCTTAGCTACTTTTTATTCTTTTCTTACGATTT
TTATTGTTATTTTATCTACGCCCAGTTAATTTTATTGGCTTTTACAGAATATATATCGGA
GGGTATCATCATTATAGGGCAATTATAATATGAGGAAAGAACCTTTTTGGGCTATGTATT
GATTCTCATTATTTTCTAATGCTTTTTTTCTATTCACTAATACATCATTATTAAACGCAC
TTATTTATTTGCCGTGAAATTAATTAATATTTTGTCTTGATATTGGGCATTTTAACTTGA
GTTTTTATTTATATTTACACCTTTTTTACTATTTTTTTCCAATCGAATTAAAGATTTACG
TTTAAATTTGTAACAGAGTGTACCTATCAAAATAAAATTGTTTTTTCTATTTATGGCTAC
TCAAGATAAGCACTCATTATCTGGTAACTTTTGATGACACTTTTGACATTACTTATGTCC
TCTATATACTTTCCTACCGTCTTAATTATTGTATTTAAATCTCTATAGAGACTATCCTAT
ATATAATAGTTTGTCACTTTTTTACGTATCAATCTCTTTATTAATTCAAAATATTGTTGA
TTATTAT
GenBank Accession FR805243 [GenBank]
Graphic View Graphic view of gene At1g47570
Predicted Position of Insertion Chr1:17483303 - go to primer design
BLAST e Value 2e-16
Hit Clone Code (BAC ID) F16N3
Hit Gene Code At1g47570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At2g47230

 
Sequence (A. th genome BLAST matches underlined) 
>64-K013563-022-179-H08-8409
CTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATGTCCTGAAAAAC
AGGTCCGGAGTATTCGCGTATGGAAGCATGGACAAGATCACATCGTATCGAATCCCTGTC
TAGACCACGATGGTGAGGATCAGCCTGTTGTTGGATGCATAATTAGCCTAGCTGGTTCGA
AATCTTTTCAGTATACTTAAGCTAAGATTTATCTCTTTGAAACATTTCAGATAGTATATG
CTATGGGATCCTCCCTTNAGTGAG
GenBank Accession AL771411 [GenBank]
Graphic View Graphic view of gene At2g47230
Predicted Position of Insertion Chr2:19389122 - go to primer design
BLAST e Value 9e-33
Hit Clone Code (BAC ID) T8I13
Hit Gene Code At2g47230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6)
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g30370

 
Sequence (A. th genome BLAST matches underlined) 
>64-K013565-022-179-H08-8409
TGAACTAAATTTGAGCTGCTAGTATCATAAGATAGTGGGAGGACTGAGTTACTAACGGGC
GATTTCATGCTGACATACGCATATTATTGGGAAAATGCGCAGTTTAGGTAAAAAACATTT
TTAAGACAGGGTTGGGGATGTGAGACAAGACGCGGGAATTCTGTTTCGGAAAAAGCGCTA
CGCACATTACCAAAAAGGGCAGAGAGATTGAGAAGTTCCAAGAGCCTGTCATACGTTAAC
GTGCACCGTGGGGGCTAATATTACCACTCGATCGAGATCGTAAGCAAGGCAGGGTCCCAC
GAGTGGTGAACGAACCAAAAGTTGAGTACTGTCCTTGTCCTCGTGTGCGCTGAAACCAAT
CCGACGGCTGAGAATTTCTTTAGGAGTACATGGCATCTCTGCATGCCCAGTCAGTCTCGA
CATGCCGTCACAGTCGCTGACTGTTCAAGCGCAGTTTAGCCACAACCCTTTTGTTTGTGT
AGTCCTTTTAGAGAACCCCGCATTATAAGCTTATATTATTTATGGAAAAAAAAAAA
GenBank Accession AL771412 [GenBank]
Graphic View Graphic view of gene At2g30370
Predicted Position of Insertion Chr2:12941010 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T9D9
Hit Gene Code At2g30370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation allergen-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37