SimpleSearch - Line and FST details


Line specific information

 
Line ID 179H11
Vector Used pAC161
Line Availability available as T3 set from NASC (N417183)
Segregation Analysis 50:46:39
Confirmed for Hit At1g65780
Parent of DUPLO pair none
Parent of pair(s) 12267

Gene hit At1g47570

 
Sequence (A. th genome BLAST matches underlined) 
>88-K104551-0022-179-H11-8409
CGTTTACCAGCATGATCTGGTTTGTGGTGCTGTGTGGTACATGCGTATACTTACCATCAA
TCTTTTCTATGGGATCCTCCCTATATTTATTCTGAGGGTTGCCGATTGTATTGTCTCCCT
TGTGTGAATTAAGAGACCATTGGGAGAGAGAGANNNCCTGGGAGGTTTTAAGCAATTTTT
TATCCTCTTGTGTTGAGACTTGTGGTCTTTCTACAACGTAAGTGAATTTTCCCTCGCTTG
GTTCTTGATTTTAATGATTTCTTGACATTCCTCTCCACACCGCCATTTTAGTATCTCCCT
TATTACTTTACTTAAATATTTTTATATATTTCACTTTCATTATTTCCCTGGCTAGCTGAT
TTATTTACTAAAATTAATCATTTATTTTTTACTGTTTATATCCCAGTTAATTATTTTACG
TATTCAATTTTTACTTTATTATTAATTGTGTTATATACTTGTAGTTAATTTTTTTCTTTT
TCCATTTTATTACATTTAATTTATCTTATTTTTCCGGTATTTGAACATCTTCTTATTTTA
TTTTTTTACATTATTTTATTTTAACGTTGTCCTATTTTTTTTCCATATACTAGATTTCCC
GATATATATGTATCAGTTAATTTATTTTTAATTCTTTCTTCTCCATCTTATTCATTTCTT
ATACTTAAGATTATTTTTTTACGTCCATTTTATATTTGAGATATTTTTATTCTATACTCT
AATATACATCTTTTTATATCACTTCCACTGTTTAATTTTTTATCATTATGTTTATTGTAA
TGATTAACTATTTTTACTTCTTCACTATTATTAACTATATATTATATTGTTGATAAACTT
TTCTCATTTTCACATCTATATTATTTGATTTTATTTTTTATACCTTATTCTTTTTTTAAT
TTGTATGTTTATTTTTCTTTTTTATTAACCAGAAATAAATGTTATCTCTTTTTTATTTTC
TTCTATTTTCGTTTTTATATTTTTTACTTTATTCTCCATCTTTATTATTTAGTTTAGATA
TTTTACACTTAGATTCAATATGTGTATTGTTGTGATTATATATGATTATAATTA
GenBank Accession FR805247 [GenBank]
Graphic View Graphic view of gene At1g47570
Predicted Position of Insertion Chr1:17483293 - go to primer design
BLAST e Value 5e-04
Hit Clone Code (BAC ID) F16N3
Hit Gene Code At1g47570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At1g65780

 
Sequence (A. th genome BLAST matches underlined) 
>88-K013565-022-179-H11-8409
CTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATGTATCTGTATATC
TGAGGCAAAGTATCCTGTAATGAGATGACTGACGTGATTCACAAACTTGTACCACTATGT
TTGCATTCTGCTCTTTGCCTTTGCGTCTGAAGACTGAACCAAAGTCTTTCCTTTTACATT
GTCAGCCCGTGCCAGATTTTCCAAGTATTGATAATACTGTCCTTTCGGGTCCTCAAGTAA
ACGTGTGATGCCATCGATAGTAGCTTTCCACCCGTAAAAAGGCATAAAACATGGGTAAAG
CTTATCAACACGTTCATCAATGAACATGTTAACAAGATCTTTCTTATTCTTTAATCTTCA
TCCTCTCATCATTCCCAAACAAAACTACATCTCCAAGACCATAGTTACCAATCTTCAATG
ATCCAGAGACTAGGAAGAGATGGAACTGCCTGCTCTTATACAGAAAACAAGTACTCAGTC
TATATGCACATAGAATACACATAGTCTCACGATCTTACCTAACGATCTCACTGCAC
GenBank Accession AL771415 [GenBank]
Graphic View Graphic view of gene At1g65780
Predicted Position of Insertion Chr1:24465421 - go to primer design
BLAST e Value 1e-142
Hit Clone Code (BAC ID) F1E22
Hit Gene Code At1g65780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-loop containing nucleoside triphosphate hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL771415 [GenBank]


Last Updated on 10.06.2021 13:37