SimpleSearch - Line and FST details


Line specific information

 
Line ID 180F05
Vector Used pAC161
Line Availability available as T3 set from NASC (N417249)
Segregation Analysis 100:99:78
Confirmed for Hit At5g53480
Parent of DUPLO pair none
Parent of pair(s) 68200, 96974

Gene hit At5g56570

 
Sequence (A. th genome BLAST matches underlined) 
>38-K013611-022-180-F05-8409
CTGATCATGTAGATTTCCCGGAATGAAGCACTTACATTGAAATATTGGCGGGTAAACCTA
CAGAAAAGAGCGTTTATTACAAAATCGGATATTTAAAAGGGCGCGAAAAGGTTAATCCGT
ACGTGATTTGATGTGCATGCCAACACAGGGTTCCCCTCTGGAGTGCTTGGCTATTCCGAG
CGATATTGACTTCTGTTCAACACCCAAACGTCGGAATGCCTGACGACGGAGCATCGTTCC
AAAAAAATCCCTTGGCTCGTGCTGGGTCGGCTATGGGATCCTCCATAAGGAGCAGGNATG
AGTTNNGTATATGGATCTTTGATGGCCAAGGATGCTCAGATTCTA
GenBank Accession FR805265 [GenBank]
Graphic View Graphic view of gene At5g56570
Predicted Position of Insertion Chr5:22903006 - go to primer design
BLAST e Value 2e-12
Hit Clone Code (BAC ID) MKN22
Hit Gene Code At5g56570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g53480

 
Sequence (A. th genome BLAST matches underlined) 
>38-K013602-022-180-F05-8409
CTGATCCATTGTAGATTTCCCGGACATGAANGCATTTATTTTTGTACTGTGATTATCTGC
TGGCAGTTTGCCTGATAATAATAGGTGTCTCGATTGTTGAACCATGAAGGAACTCAAATA
TCCGACCAAGGGTCCATGCGGTTGTGTCTTTCACATGGTTGCTTGGGTCATTTGTTAGAG
CATTGAGCATAAATGTTAACGCTGCGTTAACAATTGCCATCAACTTATCGGCAGAAGGGC
CTTCCAAAATGGAACCAAAAGCATAAGTTGCAGCTTCTCGCTCTCTCCAATCAGGCTTTG
ATATTTTCTCTTCAATAAACGGCATGACATGTGGAACAATGTCATCTCCAACTGCCCTAT
GGGATCCTCCCTTAAANNGAAGNNNNNNNNNNNNGNNNNNNCNNNNNNNNNNNNNNNNNN
NNANNNNNGNNNNNNGNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNN
AAANNNNNNNNNNNNNNNNNNNNNNAANAAAANNNAAAANAAANANANNNAANNAAANAA
AAAAAAAAAAAAAAAACCGCCGCCCGAAGCCCCCCCCCCGCCCACAGAAAAAAAAAACGC
CGAGCCCGCCAACCGCCCCACCGCCCCCCCCCGGCGCGCCCCGGCCGCCCCCGCGCACCC
CGAAGCACACCGCGCCCGCCCCGCCGCAGCCCGCGCACGCCGCCCGAAAGCACGCCCAGC
CCCCANGCCCCGACCGCCGCGCCCGCAAACCCCCCCCCGCCCCCCCCCCCCGGCGCAGCG
AACGAAACACACGCACCCCGCGCGGCGACCAAAACACGACCACACGAAAGGCCCCCCCCC
GGCACCCGCCCCAGGGGAACGCACCAACACGCAA
GenBank Accession BX890861 [GenBank]
Graphic View Graphic view of gene At5g53480
Predicted Position of Insertion Chr5:21715402 - go to primer design
BLAST e Value 3e-174
Hit Clone Code (BAC ID) MYN8
Hit Gene Code At5g53480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ARM repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37