SimpleSearch - Line and FST details


Line specific information

 
Line ID 181C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N417308)
Segregation Analysis 81:57:51
Confirmed for Hit At5g46540
Parent of DUPLO pair none
Parent of pair(s) 6350, 6352, 84123, 84124, 84125, 84126, 84127, 84128, 84129, 84130, 84131, 84132, 84133, 84135, 84136, 84137
Note

Gene hit At5g46540

 
Sequence (A. th genome BLAST matches underlined) 
>80-K020161-022-181-C04t-8409
TAGATCCGGGTTTTGGAGCAAAAGCAAGAGTTAGTAGTTAGTATTCAACAACNCTTGGTT
AAACTCTGGGTTCTATATAGTCTAACATGATTTCTTACTTCGATTTAGGGAAAATATGAA
GAGCCTATGGGATCCTCCCTATAGTGAGANNNTNCNCTTGCT
GenBank Accession BX530809 [GenBank]
Graphic View Graphic view of gene At5g46540
Predicted Position of Insertion Chr5:18878640 - go to primer design
BLAST e Value 8e-51
Hit Clone Code (BAC ID) K11I1
Hit Gene Code At5g46540 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-glycoprotein 7
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX530808 [GenBank]

Gene hit MWI23

 
Sequence (A. th genome BLAST matches underlined) 
>27-K013603-022-181-C04-8409
NTTGGATCCTGTAGATTTCCTTGACTGAAGCCTTTACAATTGAATATTCGGGGCCGATGC
ATGATGCTACTGCTATTTCAACCCCTAGGATATAACATAAGGCTCTTAGAGTGCTAACAC
GATTACTAACAGATGGACAATGGAAACGAACGTAAGGCTCTGGGCTTTGACAAATAAATG
GAAACGGTCTGCGAAATAAAATGTACAGCTAAATTCCCTTGGTTCTATGGGACCCTCCCT
ATAGTGGGATGAGGAAGCGCTTAGGCAAAGCCGTCCTGTATCGTACACCCCGTGGAGGGC
ACTTTTTTGCTTAGACGAGAGCCCCACGTTCGACGAACTCAGTGCACGCCAACGCGACCA
GACCGAACGTCGCGAAGCGTTCGTTCCAAAGTTNAGCGTCCGACATCATGATACCTTTGG
ACTTGGACTCACCGCTAATGCCCTCGACAAGCGG
GenBank Accession FR805273 [GenBank]
Graphic View Graphic view of sequence FR805273 of line 181C04
Predicted Position of Insertion Chr3:8084376 - go to primer design
BLAST e Value 1e-34
Hit Clone Code (BAC ID) MWI23
Insertion Classification Genome Hit
Confirmation Status failed
Other FSTs Supporting this Hit FR805273 [GenBank]


Last Updated on 10.06.2021 13:37