SimpleSearch - Line and FST details
Line specific information
| Line ID | 182G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N417456) |
| Segregation Analysis | 14:9:7 |
| Confirmed for Hit | At3g54940 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7171, 7172, 9142 |
Gene hit At3g54940
| Sequence (A. th genome BLAST matches underlined) | >63-K013594-022-182-G08-8409 CTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTCTGCTA CCTATGGGATCCTCCCTATAGTGAGTCCCCGTGTACTAAATGATCCAGAAAGATCCTCAT GCGCGCTTAATGTGATCTCAAGCATGATATATCTCCCGACTAGCCAGGGATTGAATCGGG TATTATGCTATCCGCTCTGGAATCCTCCCTATAGAGAAGTTTGTCTCACAAATTATACAC TTCTGCGTAAAATTATCAACTTACTACCAAGTGATTTATATATCCAACTAATATCTTTTT TTTTGGACGTCCAAAATTATTTAAA |
| GenBank Accession | AL771732 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:20355206 - go to primer design |
| BLAST e Value | 2e-30 |
| Hit Clone Code (BAC ID) | F28P10 |
| Hit Gene Code | At3g54940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Papain family cysteine protease |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g63530
| Sequence (A. th genome BLAST matches underlined) | >63-K013613-022-182-G08-8409 AAATTGATCCATGTAGACTTCCCTGTACATGAAGCCTTTACACGAGGTTATGTTCTCGTG CAGAGAAAGTATTATTATTTTATTTTCCGGTCATCCGATTAATCTTCGATTAGAAAAAAA ATTTAGTGTGTGTATATTGGGAAAGTAAATGAAATAAAGAGCTCCCGGAGACGAGGGAGT GAATCGGTATCTAATCTACGGGATCCTACCGTGAGAGAGTTGAGACTTTTATAAACAAAG TCTCCTCCTCTTTATTTTCTTTCACAATGGGTTTATCCTCCTCTGCTATCTTCTCCGGCG GCGGAGGCGGAGGAGGAATCGGATACAGAAGCTGAACTTGACGGTGGGTCTTCCTCTGAA CTCTATGGGATCCTCCCTATAGTGAGACNGTNGGNGAAACAACTGAATGGCTGCAGGTGT GCTTGGATCTGGATAGTTTTAGTTATTTTATAATT |
| GenBank Accession | AL771733 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25434549 - go to primer design |
| BLAST e Value | 4e-50 |
| Hit Clone Code (BAC ID) | MLE2 |
| Hit Gene Code | At5g63530 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | farnesylated protein 3 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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