SimpleSearch - Line and FST details


Line specific information

 
Line ID 189E05
Vector Used pAC161
Line Availability available as T3 set from NASC (N418101)
Segregation Analysis 50:25:23
Confirmed for Hit At4g21830
Parent of DUPLO pair none
Parent of pair(s) 58048, 92095, 92096, 92097, 92099

Gene hit T13L16

 
Sequence (A. th genome BLAST matches underlined) 
>37-K014621-022-189-E05-8409
TTGATCCATTGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATACCTGAGTA
AATATCGTTCCATATCTTCATCCATCGGTAGTTGTGCAGCTTAGGGTAACTGCATTCTAT
AATACGATACTAACTTCCACCTCACTAGTCGCGTTTGTCCTGCTTTTTTTGACCCACCTA
CCCAACTCTATCATGCACACTGTATTTGGTGCACTCTTTCTCTTTATGATATCCTCCCAT
GTATTGAGTTGTATTCGATAATTAAGATCATATCATCGTAATCAAATATAATACATCTCT
CTGGGATCCTCCCATAGGTGAGATTTGTTATTTAAAAATTATGTAAGGCTATGGGATCCT
CC
GenBank Accession AL759676 [GenBank]
Graphic View Graphic view of sequence AL759676 of line 189E05
Predicted Position of Insertion Chr2:7808547 - go to primer design
BLAST e Value 7e-12
Hit Clone Code (BAC ID) T13L16
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g21830

 
Sequence (A. th genome BLAST matches underlined) 
>37-K014625-022-189-E05-8409
GTGATCCATGTAGAATTTCCCGGACATGAANGCATTTACAATTGAAAATGTACATATGGA
TCAGCAAATGAGTATATATTGAATATATATTAGATTTCCCTTGCCTCGAACTTCTTTGAT
AAACTCTCCTTTGCCTCGTTTACTAAATCACCAAATTAACCATTAACAACAATGTTCAGG
TAAACTTCTTGCTGCTCAAGTAAACAGAAAAATAAAAATATAAAACCCTATGGGATCCTC
GCATTGAGGTGAGATNCNAAATAAGNGATCATTTTAACTTAACAATATAAATCGACATTA
TCATGGATATGTCACACAGTGAAGTTTGTTATTTAAAAATTATGTAAGCCTATGGGATCC
TCCC
GenBank Accession AL759677 [GenBank]
Graphic View Graphic view of gene At4g21830
Predicted Position of Insertion Chr4:11584956 - go to primer design
BLAST e Value 2e-42
Hit Clone Code (BAC ID) T8O5
Hit Gene Code At4g21830 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation methionine sulfoxide reductase B7
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37