SimpleSearch - Line and FST details


Line specific information

 
Line ID 190A05
Vector Used pAC161
Line Availability available as T3 set from NASC (N418149)
Segregation Analysis 50:48:43
Confirmed for Hit At2g48100
Parent of DUPLO pair none
Parent of pair(s) 77095, 77096
Note

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>33-K014640-022-190-A05-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGACGATCCGTCGTACCA
ACTTTGTCAATTCATACTGAAGTGAGAAAAATGGCTTCTATGATATCCTCTTCAGCTGTG
ACTACAGTCAGCACGTGCTTCTACGGTGCAATCGGCTCGCGGTGGCTCCATTCCGCGGCC
TCAAATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTACAA
GCAATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGG
ACTCCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTC
GenBank Accession FR805405 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15385032 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At2g48100

 
Sequence (A. th genome BLAST matches underlined) 
>33-K014641-022-190-A05-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGCATGG
ATATATTGGTTTCCCTGTCACCGATTACAGGTTCTGCTTGTGGACCATTTGTGCTTGTTT
TGTTTTATAATTCTTCCTTTTAAATCTCACCCCGCCTCATGTTCAGGCACGAGATAACTG
GATTGACTAAGGAAGATTTGAAGGATGGTATGCCACTTGAGCATGTACGAGAGAGAGTTT
TTTCGTTCTTGTGCGGTGGACAGAATGATGGGGCTGGAAGGCTTCTTCTTGTTGGTCATG
ACCTTAGGCATGATATGAGTTGCTTGAAGCTTGAATACCCTATGGGATCCTC
GenBank Accession AL759722 [GenBank]
Graphic View Graphic view of gene At2g48100
Predicted Position of Insertion Chr2:19672084 - go to primer design
BLAST e Value 2e-151
Hit Clone Code (BAC ID) T9J23
Hit Gene Code At2g48100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Exonuclease family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37