SimpleSearch - Line and FST details


Line specific information

 
Line ID 191C11
Vector Used pAC161
Line Availability available as T3 set from NASC (N418275)
Segregation Analysis 50:46:40
Confirmed for Hit At3g61310
Parent of DUPLO pair 7931
Parent of pair(s) none

Gene hit MXK3

 
Sequence (A. th genome BLAST matches underlined) 
>83-K014644-022-191-C11-8409
TTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATAGGTAGAACCTATG
GGATCCTCCTATAGTGAGAGANANATCGCTTCGGTTCCCCTTTAATGTTGAATAACATTA
GACAGATAGCGCCGATATGGATGGATCTTAAACGCGTTCAATTAATATTGATACTGGTTA
TGAACTTATGATGGTCGAACATACTCACTTTTGTTCAACCCAAATATCACATCAAATACG
GGAAACACAAAATGCTTGATATAATAATGAAAAAACCCGTATAGGGACCAAAACCCTACT
GAAATTTTGTTAGTCTGCAAATGGTCGATCCAAGAAAAAAGTTAAACGGTGATTTTAAAT
TAATCCATTTCTACTGCCAACACTCACACTAAACTCTGTCTTTTAAACGGCCTAATCATG
TTGGTCAGGACGCCCAGAGCAACCTTATGCCTTACCCTTTTGTTTTGCTTTACCTTTTCG
GGACCTCACTTTGAACCCACCTCCTTCTTTTACACTGGCACCGCTTTCTTTTCCTCCTTA
TGCAACTTTTACCACATTGGCCAATCCGGAGGAACCCATTTTTCATAAAATTCCTA
GenBank Accession AL759833 [GenBank]
Graphic View Graphic view of sequence AL759833 of line 191C11
Predicted Position of Insertion Chr5:25938292 - go to primer design
BLAST e Value 1e-62
Hit Clone Code (BAC ID) MXK3
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g61310

 
Sequence (A. th genome BLAST matches underlined) 
>83-K014642-022-191-C11-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATTCTCAAGAGCT
ATGGGATCCTCCCTATAGTGAGAGAGAACAGAATGATTCTACGAGGACGACGGAAGAAAC
ATACTATACCAATGGAGACGTCGATGACGTGCGGGGCAAACCTCATGCCAGCTGATGAGA
CGCATGCTTTACCTTACAAAGAAGACTCGAAGGTGTTCAGATAAATGAAGCTGATTGTAA
TGATGGAAACACAGAGCACTAACTCCGTTTAATGAAAAAGGCCACCGAGTAATGCAAAAC
TAAGAACCGAGTTCTACAATTCGACATTATAGAAGTCCACAGGTCTAATTAACCCTGAAC
AGATCGAATTTGCTTATCATAAACTTACGACCAGTGTCCTCATTTGAAAAACTATATCAT
AAACCAAGCTCACAACTTACCACCATATTCAGAGCCTATGTACTTGTCGGAAATTAAAAC
TTATAAGCTACGAGACTACGGCTATTACCTATGGAAGATGGCCG
GenBank Accession FR805430 [GenBank]
Graphic View Graphic view of gene At3g61310
Predicted Position of Insertion Chr3:22691797 - go to primer design
BLAST e Value 6e-43
Hit Clone Code (BAC ID) T20K12
Hit Gene Code At3g61310 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AT hook motif DNA-binding family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37