SimpleSearch - Line and FST details


Line specific information

 
Line ID 191F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N418306)
Segregation Analysis 50:50:38
Confirmed for Hit At1g80900
Parent of DUPLO pair none
Parent of pair(s) 52569, 89394
Note

Gene hit At1g80900

 
Sequence (A. th genome BLAST matches underlined) 
>46-K014644-022-191-F06-8409
CTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGACATC
TCTTATCTTAAAAGCTCCTATAATATTTCATTGAACTCTTCTTGACATTTTTGTTGTTTT
AAAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATGTTCCTCTTGACAATGCA
GTGATGCCTATGGGATCCTCCCTATAGTGAGAACTCTGAAACCTACAAAGGGAAAATCTA
TTCTCAATGCTGAGCATACAAGCGCACATTAAAGTGTGAACTATTATCTGACCTGATAGT
CAATGAAAGAACAAGGAGTTCCCTGAGCAACATATACAGCCACGGTACTAAAAAGGAAGG
AGACCTGAGGAACCTGACCTTCCTAACCATAAAGGAGCGAGTCCAATAGCTCTACCTATG
GGATCTCCTCTAGAGATGAGGATCTGGCCCTCTGTTTCCATGGATCCTTCGGGCGATTCG
GATCAACCGAAATCAAAGGCACCTCAACGAGAAGTCCTCCACACCCGCTGAAACCCTAAC
CCAGGTTTTGGCTCTCGCTCACGAATGGAACCTCCCCCAATCCCACAATCCCCCTA
GenBank Accession AL759871 [GenBank]
Graphic View Graphic view of gene At1g80900
Predicted Position of Insertion Chr1:30399046 - go to primer design
BLAST e Value 4e-16
Hit Clone Code (BAC ID) F23A5
Hit Gene Code At1g80900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation magnesium transporter 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g19360

 
Sequence (A. th genome BLAST matches underlined) 
>46-K014642-022-191-F06-8409
TTCTGATCCATGTGAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGACA
TCTCTTATCTTAAAAGCTCCTATAATATTTCATTAGAACTCTTCTTGACATTTTTGTTGT
TTTAAAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATGTTCCTCTTGACAAT
GCAGTGATGGCTATGGGATCCTCCCTATAGTGAGAACAAAAAGACCGACTANTTGCCAAT
TTTTTTTCAATGCAAAAACGTACATGCCCGCATCGTAATTAGAACTTTTATCTGGTTTTA
TTGCTTATTAGATAAGAAGGTGTTCCCTGATTTCTATATTCTGGGATGGTACCCTACAGC
AACCGATGCTGAGGAATCTGATATGCATATCCCTACCGCTGTGACCCCAATGC
GenBank Accession AL759870 [GenBank]
Graphic View Graphic view of gene At5g19360
Predicted Position of Insertion Chr5:6522725 - go to primer design
BLAST e Value 3e-57
Hit Clone Code (BAC ID) F7K24
Hit Gene Code At5g19360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcium-dependent protein kinase 34
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 196F06
Other FSTs Supporting this Hit AL759870 [GenBank]


Last Updated on 10.06.2021 13:37