SimpleSearch - Line and FST details
Line specific information
| Line ID | 192G12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N418420) |
| Segregation Analysis | 50:44:44 |
| Confirmed for Hit | At5g46990 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 97127, 97128 |
Gene hit At5g46990
| Sequence (A. th genome BLAST matches underlined) | >95-K014648-022-192-G12-8409 TTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAACTGAAAAAAGGAAAAGAAA GAAATCTATAAAAAAAATGTGGATTTGTGAACAATGCACGTGATGCCCTGGAATATTGGC CTATGGGATACATACATGTATCGATGTCGACACCGTCGACATTGCTCAGTCTTTTAATTA CTATGCTCATATAAGGCCAGACATCGTATAGTGTCTAGCCTAACAGCCCCTCGGTAATGT TTCTTAGTTTGTTATACAACAATGAATTAATGAAAAAATATAAGGTCAGAGTTTACGTAC AACTTTCATCGAGATAGGAATGAATCTATGTTGCACCATTTCAAATCATGTCTCCTATTT TCACCTTTTCTAAATTTCTTTGACAAGCTACAACACATATTTAATAAAAAGTTTTGTTCT TACCACACTTCTCAATTGTAAAAAATTTCTTTACATATATATAGTACTTCTTAAGAAATA ATTCTGAAGAGAGAGGGGAATTCATGAAAGAAGGCCATGTTAAACTACGGTTCATTAGCT TATATCCTTCCTGATATAATTTAGACTCTAATATTTAAGGGTTAGGAAATGACTTCCCCA CAGAAAATAGGGGAAGGAAATCGGCCTTTTTCCCCCTACAATGCTTCACATGAAAAGGAA ATTGATTCCTTC |
| GenBank Accession | AL759992 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19067844 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MQD22 |
| Hit Gene Code | At5g46990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant invertase/pectin methylesterase inhibitor superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g21870
| Sequence (A. th genome BLAST matches underlined) | >95-K014647-022-192-G12-8409 TTTGATCCATGTAGAATTTCCGGACATGAAGCACTTTACAACTGAAAAAAGGAAAAGAAA GAAATCTATAAAAAAAAATGGATTGTCCAAACAATTCAAGGGATGCCATGTAGAATATGT GCTATTGGGATCCCTCCATATAGGGAGNNNNNNNNCNNNNNNNNNCNCCNCNCCNTNNNC CCCTCCCCCCNCNCNNCCCCNNCGCCCCCCCAACATTAAGTANTACCCCCCCCCGCACCT CAATTCNTGCTCCGCCACGAAAACACACCCGTCCGCTATTACCCCCTACGGATCGTCGCC GCGGGGCGAGCCGCACCGCCGACCAACCAAAACACCAACCCGCACCCCCGACCCACCCCC ACCACACAACCCACCCTCAAACGCCCGACCACACCCCACCCAACAGCACAAAGACGGCCC CACAAAACACCCCCCAATTCGAGCCCACCCAGCCCGCGCGCACTCCCCACCCAGAATTAC CGAAACCACGGACCGACAGCCCCCGGCCAACAAATATACCCGCCCCCCCCCACACGCGGC CCCATCAAGGGACCCCATATCACGACCCCGNGCGCCCGCACAACTCGGTAACCGCCCCCC ACACAAACCGCTACGACACCCGCTAAACCCCCCCCAACTAATCACAGACACCCCGTCACA CCCCAACCACCCCANTTATACAACGCGGACCGCGACGCGGCGAAATAAACCGACGGCCCC GCGGACACCCGCACACGGGCGGCGGCACACCAAACCCCAACAGAGCCAATGAAAAGAGAT AGGCGCCCGCGGGCATCAACAATCGGACCAGAATAAGACAAAACGAAACAAC |
| GenBank Accession | AL759991 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:11604325 - go to primer design |
| BLAST e Value | 6e-18 |
| Hit Clone Code (BAC ID) | T8O5 |
| Hit Gene Code | At4g21870 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HSP20-like chaperones superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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