SimpleSearch - Line and FST details


Line specific information

 
Line ID 192H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N418422)
Segregation Analysis 50:49:39
Confirmed for Hit At5g17700
Parent of DUPLO pair none
Parent of pair(s) 4823, 4847, 4853, 86262, 86334

Gene hit At5g17700

 
Sequence (A. th genome BLAST matches underlined) 
>16-K014648-022-192-H02-8409
TGATCCATGTGGATTACCCGGACATGAAGCGCTTCTACAATTGAAATATCTCTAGGCTAA
CCTATGGGATCCTCCCTATAGAGGGTGACGAGACCTTATGTATCATCCCTGAGTTATATA
TTAAAAGAAAATAACCTCCTCTTCCTAGGCAGAGGTGTAAATAACATAACACAATATCAA
CGTGGGGATACCAGGTACAGCCGACATTACGGACCATAGGGCGTGGATACAATATGATTT
ATTCAAGTTAAAAGGGTAACCGTTCTAATGATTGATCATAATGAAGTACTGGATACCAGG
TTTCATATATATGATGCACCTTAATCCCAACATTGAAAACGTCAACAATGAGGACACCTA
AAGGAACACCAATTGCATAATAAGATGCTAAGTTCACTACTGCTACCATACTCTGCATCC
CTGCTCCAATAGCTACCCCTGTTTATATATGTACAAACAGATTTAGTGGTTACAAATTGA
CAGAAATCTAAAAGTGCATGTAATGAATCTATTGATGTCTAATATAAGGGGTTTATTTTG
TAACCACATACAATGGGCCTGGATGATGCTCGAAAAGAATAGACATGCTAAGGACGAATG
AGAAGATAATCTCTTGCATCCCAAAACTGCTTGGCTATCAAAGAACAAATCCGAAATCTG
ACCGCC
GenBank Accession AL759994 [GenBank]
Graphic View Graphic view of gene At5g17700
Predicted Position of Insertion Chr5:5831124 - go to primer design
BLAST e Value 1e-152
Hit Clone Code (BAC ID) MVA3
Hit Gene Code At5g17700 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL759994 [GenBank]


Last Updated on 10.06.2021 13:37