SimpleSearch - Line and FST details
Line specific information
| Line ID | 196C10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N418754) |
| Segregation Analysis | 100:53:45 |
| Confirmed for Hit | K21P3 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5462, 5473, 5538, 5584, 7590, 8668, 75754, 75755 |
| Note |
Gene hit K21P3
| Sequence (A. th genome BLAST matches underlined) | >73-K020162-022-196-C10t-8409 TATCCACTCTTTTCATCTCACGGACGTTTTCTCTTCATATATTTTGTGCTATGGGATCCT CCCTATAGTGAGATTCATTGAATTTCTCTTTTCCATTTGAATGTGAATGTACACTCTTTG TGATATCTTCTTTTTACAAAATCATTTTGATTTTTGATTTTCCATCTATGGGATCATCCT TATTTTATGTATTTTCTCCTATTTACTTTCATTTGTCACAATGATGTTATTTGTAGGAGC CACCTTCCTTTTCCAATATCTTCACAATAAAGTGACTGATAGTTGGGCAATGGAATCCGA CGAGGTTTCCGGATATTACCCTTTGTCGAAAAGTCTCAATTGCCCTTTGGTCTTCTGATA CTGTATCTTTGATATTTTTGTATTTTACAAGCCTGTCCCGCTCCACCATGTTGACGAAGA TTTTCTTCTTGTCGTTGAGTCGTAAGAGACTCTGTATGAACTGTTCGCCAGTCTTTACCG CGAGTTCTGTTAGGTCCTCTATTTGAATCTTTGACTCTATGGGAATTTGGGATCCTCTAT GGGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNN |
| GenBank Accession | BX530824 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19968192 - go to primer design |
| BLAST e Value | 3e-05 |
| Hit Clone Code (BAC ID) | K21P3 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HE664303 [GenBank] BX530825 [GenBank] BX530824 [GenBank] |
Gene hit At5g58710
| Sequence (A. th genome BLAST matches underlined) | >75-K114417-0022-196-C10-8409 CATAAATGTTTTGCACATTATTATCAATTTATCATTATGGATGTTTTCACTACATAGATT TTGTACTAACCTGCCCGGCCGCTAACATCTACATTTTTGAATTGAAAAAAAATTGGTAAT TACTCTTTCTTTTTCTCCATATTGACCATCATACTCATTGNTGATCCATGTAAATTTNNN NGATATAAANCCATTTTTAATNAANATATNTNNTTGCTGATCTTCCATTTTNACACCCTT TCTTATCCATTTATGTTTTGCANNTTATTAGTGAGGTTCTATTATGGAGGTTGTTTCTTC ATACATTTTGTTCCCCCGTAGCGCAGCAACTAAAAATTCTTGCNTATTCCTTTCTCCCCT GTGAGTATAAAGTTTAGTTAAGCTTTTCATATCAGGGTATATAAACTGCTGTGCTGGCTG AAAAAAGTTAACAGATAATTCTATTGGCATAGGATGAAAATGGAACATATATTGTTAACA TACAGGTGCTTATGGCTCGGAAAGTCTCGAGCTATTAGAGGAAGAGTGGACGATGAATCT CGTGGAGTACGACCGTGACAATACAAGTATCGAAATAGTTATTGTACAGTATAATATAGT GAATATCTACGAGTGTATTACTATATAGAATGTGACCCGCGTTAGCAAAAAACTCATGAC TACTGTATTAGTATAGTACGCGTAAATATTGGGAATAATATCAAGTCTTATATAATCTAA AGAATCATACGTCATACTAAGTATTTCTAAGATTATGGTGAGTCAATATATGCTATACAA TAGGTGTATCGATATTACTCGTAGCTGTTATTAGTATTAGGGTAATGAAGTTTTAGGTGG CAGTAATTATGACTAGATAGACTGCTGGTATTTCAGTGTATTTGTATATTATGAAATCAT GAAGGCGAGGATTTATCATCAATAAGATGTGTAAGATAAAGTATGTGATAGGTTAATTGA ACTAGTATATAATATAAATGAATAATGTATAACCACTGGTAGGCCATGTACTTTAAAGAA GGATAACATACAATTACGAATTAGAGGACTATGATGTACCAGTAAATTCAGGTTATATGA GGTAATTATTTGGAAGGTGACTTTACTTTGATGAGTAAACTGAGTATGATGTAGA |
| GenBank Accession | HE664304 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:23719234 - go to primer design |
| BLAST e Value | 2e-37 |
| Hit Clone Code (BAC ID) | MZN1 |
| Hit Gene Code | At5g58710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | rotamase CYP 7 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g26560
| Sequence (A. th genome BLAST matches underlined) | >75-K014718-022-196-C10-8409 TTGATCCATTGTAGATTTCCCGGACATGAANGCACTTACAATTGAATATATGTAATTGCC GATGCAGGCCTCTTACATGCACAGCTTCTTATCGCATAAGATGTTCTGACACATTAGTTA TCACTTTCTCATTATGGATGTTTTCTCTTATATCTTATGACCTATGGGATCCTCCCTATA TATAAGTTCTTACACAACTTATCTCTGTTCCATAACTTATAACAAGCGATCATATATCTT TAAACAATCTTAATTATGTTTTTGGATCCGTTGATGTTTGGGGATTACCCAAGCTCGATG AGAACCATAGTCGGAAGCAGATTACCGGTGTCTACAGGATCTCAATCTTCTCTGGTGAAG GGATCTTTAAATTCTGTAGGGATTAATCACTACACAACGTACTACGCAAGGAACAATGCC ACCAATCTCATTGGCACTCTTCTACACGGACGCCGTTTCTGATTCTGGAACCGTCACTCT ACGTAAATACTTATACTTCTACCTCACGTAAACCCTATGGGATCCTC |
| GenBank Accession | CT026170 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9180612 - go to primer design |
| BLAST e Value | 3e-162 |
| Hit Clone Code (BAC ID) | T1K7 |
| Hit Gene Code | At1g26560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | beta glucosidase 40 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 196C12 |
|
Last Updated on 10.06.2021 13:37 |
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