SimpleSearch - Line and FST details


Line specific information

 
Line ID 196C12
Vector Used pAC161
Line Availability available as T3 set from NASC (N418756)
Segregation Analysis 50:44:38
Confirmed for Hit At1g26560
Parent of DUPLO pair none
Parent of pair(s) 7698, 8780, 8793, 9359, 9378, 69861, 69934, 69973, 70011, 70142, 70144, 70155, 70160, 70161, 70162, 70165, 70166

Gene hit F19P19

 
Sequence (A. th genome BLAST matches underlined) 
>91-K114416-0022-196-C12-8409
TCGTCCTGTCCACACATCCAACTTTCTATTTGCTATTTAAGGAATTGCGTATATGGCTTA
CTGCAATTACTACTACTGATCGAACTTTGACTTTTTCTCACCAGGCCCGTTCCTATTATA
ATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTT
TTCTCCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCATTTTTTTTCATGT
AGATGGTGTCTTCCTCGCCCGATTAGACAACTTTCTTTCTGTGTGTCTACGAACTCCTCA
AAGTGGGGGCTGAAATGACAAATTTCACTATATCTTCCATTTTTTCGCCCCTCCCAGACA
ACTATGGAGAANGANNATCACCCACACCACACGGCCATGAAGATGAGATGAGAGACTTCG
GCGTTAATTCCATGCTTCTATCAGGAATCAGGATCACCATAAAAGCTAACCTGCCCGGCC
GC
GenBank Accession HE664305 [GenBank]
Graphic View Graphic view of sequence HE664305 of line 196C12
Predicted Position of Insertion Chr1:1175858 - go to primer design
BLAST e Value 6e-44
Hit Clone Code (BAC ID) F19P19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g26560

 
Sequence (A. th genome BLAST matches underlined) 
>91-K114417-0022-196-C12-8409
TTTCCGGATTGCAATAAGTTGTATTGTGGCTTTCACCCATAATCACGACGGAATCGAAAT
TTGGCATCTGCTCAAAAAGTACTTTACTTTTATAATGGCGCGGCCGACATCGACCTTTTT
GAATTGAACAAAGTTTGGTAATTACTCATTTCTGTTCCTCCATATTGACAACCATCTTAA
TTAGGTTTTTGGATAAGTTGATGTTTGGGGATTACCCAAGCTCGATGAGAAGCAGAGTCG
GAAGCAGATTACCGGTGTTTACAGGATCTCAATCTTCTCTGGTGAAGGGTTCTTTAGATT
TTGTAGGGATTAATCACTACACAACGTACTACGCAAGGAACAATGCCACCAATCTCATTG
GCACTCTTCTACACGACGCCGTTTCTGATTCTGGAACCGTCACTCTACGTAAATACTTAT
ACTTCTACCTCACGTAAACCCTAACCTGCCCGGCCGC
GenBank Accession HE664306 [GenBank]
Graphic View Graphic view of gene At1g26560
Predicted Position of Insertion Chr1:9180609 - go to primer design
BLAST e Value 5e-146
Hit Clone Code (BAC ID) T1K7
Hit Gene Code At1g26560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation beta glucosidase 40
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37