SimpleSearch - Line and FST details


Line specific information

 
Line ID 196F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N418786)
Segregation Analysis 50:50:49
Confirmed for Hit At5g19360
Parent of DUPLO pair none
Parent of pair(s) 37540, 81975, 81976, 81977, 81978, 81979, 81980, 81982, 81983, 81984, 81985, 81986, 81987, 81988, 81989, 81990, 81991, 81992, 81993, 81994, 81995, 81996, 81998, 81999, 82001, 82002, 82003, 82004, 82005

Gene hit F1N21

 
Sequence (A. th genome BLAST matches underlined) 
>46-K014718-022-196-F06-8409
CTGATCCATGTAGCATTTCCCGGACATGAAGCACTTTACAATTGAATATATTCTGTCATG
GCTTATTTTTAAACCTTCTATATCTTTTATTCTATTGATCTCTTCTTGACATTTCTTTTG
GTATATGGATCATCCAGTGGATAAAGGAGGACGGAGACTCACCGAATGTTCATCTTGACG
ATGCCCTGGGGGCTATGGAATTCTGCCTTGAGCTGGTGTTGTGTTTGGATGCAAGCATAT
GTTCTGTCTCCATGTGGCTCCCATCATTGGGCTCTTCACTCTGTCTTGTTCTTTTTCAGA
TTAATTTGTTTGGCTTCCTATGGGATCCTCCT
GenBank Accession AL760358 [GenBank]
Graphic View Graphic view of sequence AL760358 of line 196F06
Predicted Position of Insertion Chr1:25156765 - go to primer design
BLAST e Value 4e-50
Hit Clone Code (BAC ID) F1N21
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit HE664332 [GenBank]

Gene hit At5g19360

 
Sequence (A. th genome BLAST matches underlined) 
>46-K114416-0022-196-F06-8409
CTCTTATCTTATAAGCTCCTATATATATTTCGTTGAACGCTTCCTGACATTTTTGCTTGC
TGAACAGATCTTCGCCGGTATCTCGGAGGATGGATACGCTCCAGGATGTCCCTCTCGGAC
ATCCACTGTTGTCAATTGAGCCACAGTTGCTAATTACTCTTTCTTTTTCTCCATATTGAC
CATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAAT
ATATCCTGACATCTCTTATCTTAAAAGCTCCTATATATATTTCATTGAACTCTTCTTGAC
ATTTTTGTTGTTTTAAAGATCATCCATGGACCACCGAGGATGGAGAAGCACCGGATGTTC
CTCTTGACAATGCAGTGATGTCTCACCTGCCCAGCAACTAAAA
GenBank Accession HE664331 [GenBank]
Graphic View Graphic view of gene At5g19360
Predicted Position of Insertion Chr5:6522978 - go to primer design
BLAST e Value 1e-60
Hit Clone Code (BAC ID) F7K24
Hit Gene Code At5g19360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcium-dependent protein kinase 34
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL760357 [GenBank]


Last Updated on 10.06.2021 13:37