SimpleSearch - Line and FST details


Line specific information

 
Line ID 198E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N418971)
Segregation Analysis 50:37:31
Confirmed for Hit At5g54820
Parent of DUPLO pair none
Parent of pair(s) 59927, 93002
Note

Gene hit At5g54820

 
Sequence (A. th genome BLAST matches underlined) 
>85-K025984-022-198-E11-8409
TGCCGCTTTACCCCGGTGGAGCTTGCATGTTGGTTTCTACACAGAACTGATCCGGTTAGG
CAGATAATTTCCCTTGAGAACTGAGCCATGTGCACCTTCCCCCCCACACGGTGAGCGACG
GGGCAACGGAGTGATCCACATGGGACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGA
GAAGCAGTCGATCCGTGAGATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAA
GTATTTGAACGCAAGTATGGGATCCTCCCTATAATGAGAACACGACACTTGGTGTTAAGA
ACTAAGATGCATACCAAGGAGTTCAATGGAATAATTCTTCTTCTCAACAACTGCCCTAAT
TTGGAGACGCTTGGTTTTGATATTCTAACTCCATGTCCTTTCTCGGTAAGATTTCTACAT
ATATATGCAATAAAGAGTAGTCACATTTTGTCATTACTTAATATGCATGATTTTCTTTTA
ATATTTTGTAGGCAACTTCGTC
GenBank Accession CR396378 [GenBank]
Graphic View Graphic view of gene At5g54820
Predicted Position of Insertion Chr5:22270999 - go to primer design
BLAST e Value 9e-124
Hit Clone Code (BAC ID) MBG8
Hit Gene Code At5g54820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box/RNI-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR396377 [GenBank]

Gene hit At4g24440

 
Sequence (A. th genome BLAST matches underlined) 
>85-K014762-022-198-E11-8409
NTGATCCATGTAGAATTTCCCGGGACATGAAGCATTTACAATTGAATATATCCTGATCGT
ACATCTCCTGTACAGGTCAAACGTGGCCATTCTCTACTTTCCCACGATCTGTTTGATTAT
AATTCGAGCAACAAATCGTCGAATCAAAATTCGCAACTAATTACAAATAGGGAATCTGAA
AGTTTCGACGCCAAAAAAAAGGTGCTATGGGATCCTCCCTATAAGTGA
GenBank Accession AL760508 [GenBank]
Graphic View Graphic view of gene At4g24440
Predicted Position of Insertion Chr4:12633500 - go to primer design
BLAST e Value 5e-56
Hit Clone Code (BAC ID) T22A6
Hit Gene Code At4g24440 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37