SimpleSearch - Line and FST details


Line specific information

 
Line ID 204C07
Vector Used pAC161
Line Availability available as T3 set from NASC (N419519)
Segregation Analysis 50:17:17
Confirmed for Hit At5g61790
Parent of DUPLO pair 2281
Parent of pair(s) none

Gene hit At5g61790

 
Sequence (A. th genome BLAST matches underlined) 
>51-K014508-022-204-C07-8409
NTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATGTTAATCAATTC
TGATTTGGTGCTTTTTTGGTTATAAATCGAATATGTTCCTCTTGTTGAAGACTTGAAGTT
GTTGATGATTTTCCATTTTTGCATTGAAGCTTCTTGTTAAAGACGATTTTATCTGTTTCA
GGTGTATGGAAGCATGCAAAGAGTGAAGGACATGAGGATTATGGACTTCTCGTGAGTGAG
AAGGCTATGGGATCCTCCCTTNAGTGAG
GenBank Accession AL760956 [GenBank]
Graphic View Graphic view of gene At5g61790
Predicted Position of Insertion Chr5:24829224 - go to primer design
BLAST e Value 1e-105
Hit Clone Code (BAC ID) MAC9
Hit Gene Code At5g61790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calnexin 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL760956 [GenBank]

Gene hit T4B21

 
Sequence (A. th genome BLAST matches underlined) 
>51-K014509-022-204-C07-8409
TTGATCCATGTAGAATTTCCCGGACATTGAAGCCTTTACAATTGAATATAGATAGTAATA
TAACCCTAAACAAAACGACTTAAATTACAATTTTATGAGGGATTATTTGATCAAGGATTA
AAATCAATATCTATGTTTTAAGATTTAGAAACTACTTTTTTTCTTTCTAAATTTCCATGT
TTAATTTGTGTGGATTTCATATTTTTTTACTATATTTTTTTTGGTTCCTTTAGAAATATA
ATCAAATCTGTTTCAATTCATTTCATTGTAAAGACCACCATTGGATTATGTTCGAATTTA
TATGGGCACTAATATCCATGATTCAATAGTACCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL760957 [GenBank]
Graphic View Graphic view of sequence AL760957 of line 204C07
Predicted Position of Insertion Chr4:2457963 - go to primer design
BLAST e Value 7e-55
Hit Clone Code (BAC ID) T4B21
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37