SimpleSearch - Line and FST details


Line specific information

 
Line ID 207C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N419802)
Segregation Analysis 68:58:45
Confirmed for Hit At4g39770
Parent of DUPLO pair none
Parent of pair(s) 1760, 5678, 5747, 8695, 93659, 93665, 93669, 93672

Gene hit MAB16

 
Sequence (A. th genome BLAST matches underlined) 
>11-K014553-022-207-C02-8409
TTGTCCATGTAGATTTCCCGGACTGAAGCCTCTACAGTTGATATACCCTATGGGATCCTT
CCTATAAAGAGACTAGGGAATTTATGTCTTGTAATGTGATAATACTCATCATGGTCTGGA
CATGCGCATGCTGGATTTAAGAGACGATCTACACTGACTCACCTGCAAATGCTGTGTTTG
CCGACGCGTCTTACCGC
GenBank Accession FR805757 [GenBank]
Graphic View Graphic view of sequence FR805757 of line 207C02
Predicted Position of Insertion Chr5:14198326 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MAB16
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g39770

 
Sequence (A. th genome BLAST matches underlined) 
>11-K014550-022-207-C02-8409
NTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATAGACACTAGAAAT
GGCACATCTCACAGTGTTGATTAAAATCAGAAGGGGATGGTGTGAGACACGCTAATTGTT
CCGACATGTCCCCTGTGTATACTCTAGAAATGATCGCTCGCGAGCAAAGATGCGTGCAAG
GTACTCTACATAATCTATTAATACATCTGATTAGATGCAAGTAAGGAATTAACGTACACT
CATCTAAGGCAAAGGGATTCAATTATTGGTATAGGTATTGAGAGAACGAAGACAAGGTCT
TGGCATTCTTGTATCTAAATTTCCAAAGGAGGCTATGGGATCCTCCCTTAGGTGAG
GenBank Accession BX572220 [GenBank]
Graphic View Graphic view of gene At4g39770
Predicted Position of Insertion Chr4:18449628 - go to primer design
BLAST e Value 2e-30
Hit Clone Code (BAC ID) T19P19
Hit Gene Code At4g39770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37