SimpleSearch - Line and FST details


Line specific information

 
Line ID 208E01
Vector Used pAC161
Line Availability available as T3 set from NASC (N419921)
Segregation Analysis 50:44:31
Confirmed for Hit At5g46600 At1g51780
Parent of DUPLO pair none
Parent of pair(s) 91483, 91486, 91490, 91494, 91496

Gene hit At5g46600

 
Sequence (A. th genome BLAST matches underlined) 
>05-K014551-022-208-E01-8409
CTGATCCATGTAGAATTTCCCGGACCATGAATATATCATGTTACTATGAAGGTTAGAGCC
TAAGAAGAGCTTAGGTTGTGACTTGATTGTGGAGTTGAGATCTTTTAATGCCGCTTCGAG
ACTGTCGGAGAGAATCTCCGACGAGCAATGACGTCGGTTTTGAATGCTTTCGGAGAGTTC
TGATAAAACTTTGCAGATTTCTCCGGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL766196 [GenBank]
Graphic View Graphic view of gene At5g46600
Predicted Position of Insertion Chr5:18908273 - go to primer design
BLAST e Value 2e-92
Hit Clone Code (BAC ID) F10E10
Hit Gene Code At5g46600 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation aluminum activated malate transporter family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g51780

 
Sequence (A. th genome BLAST matches underlined) 
>05-K014554-022-208-E01-8409
TGTAGATTNTCCTGTCCTCCTTTCCCGCCGACTGTGAACAATAGAACCTTGCACCTGTTA
TACAAGAACGTTACTGTGGATATGTAAGGGATTGAGAATTATGTTGAGACGCTACCAGTG
ATGGTATCATGAGGATTTTGCTTTCTACCAACAAGCAATGCCCGGGACATTTTATCTTTG
TTGGGATGCAAAACAAATCTCATTCACCAATGGCGAACCCTCACTCTCCGTTTTTTGAAG
TTAATGAAGAATTACTCCCTTATGGTGCTTCCCTTCTTGCTTCTTTGGCCACAAGATATC
TTCTTGACTCATCTTCATCGCCAAATAAAGATGAACTTTGATGCCAACTTTGGATCTCTC
TTCTTCATCTCATGTACCTATCGAAAATGTCAACCATGGTTACATGGTAACAGTTATTCC
CTGTAATTCTCAGTTGTCAATCAATAAAATAAACGGCAGTGTCAAGTTCTATTAGTTACG
GGAGTCTAAGTCACCAAAGGAGAAACAGAGGGAGGACCAGAAACCTGGAAGTTCCTTAAG
TCACAAAGTAAAGGGCCTTGCCAAAATTTCCCC
GenBank Accession AL766197 [GenBank]
Graphic View Graphic view of gene At1g51780
Predicted Position of Insertion Chr1:19206129 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F19C24
Hit Gene Code At1g51780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation IAA-amino acid hydrolase ILR1-like 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37