SimpleSearch - Line and FST details
Line specific information
| Line ID | 212B05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N420273) |
| Segregation Analysis | 50:4:3 |
| Confirmed for Hit | At2g47970 |
| Parent of DUPLO pair | 2486 |
| Parent of pair(s) | none |
Gene hit At5g31804
| Sequence (A. th genome BLAST matches underlined) | >34-K014137-022-212-B05-8409 TTGATCCATGTAGATTTCCCNGACATGAGAGCCTCTATCATTTGAGCATGCATGTTATAC AACACTGACTAAGGGAGACTCGCCTATATTGAGGGTCTTTACATAATTAAAAACCCTATT CTCCATTATACAATTATTTTTCTTGTACCCAATCTTGCATCTGCCTATGGAATCCTCCTT AAAGAAGAGGNCATACCTCCTTTTTTAGGAACGCAGTGGACTGCAGATACCCAAGTGCTA TCACAGATAGGGTAGATAACCCTATGGGATCCTCCCTAT |
| GenBank Accession | AL766598 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:11718318 - go to primer design |
| BLAST e Value | 2e-27 |
| Hit Clone Code (BAC ID) | F28N5 |
| Hit Gene Code | At5g31804 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At2g47970
| Sequence (A. th genome BLAST matches underlined) | >34-K014133-022-212-B05-8409 NTTGGATCCATGTAGACTTTCCCGTACATGAANGCCTTTACAATTGAATATATCCTGTCC TTCCTCGGTGACGGTGCCGTACATAAAGCCGCCGCGCTTGACGGCAAAAGCTATGGGATC CTCCCTATAGTGAGANTGGNATGATNATCCATCTGCTTCTCTATGGGATCCTCCCTATAG TGATGGACCCCTCATTTATTCTAACACACGTTTCCCCCATTTAGTTCCCACAAACGCGTT CCAAGCCACCCCGCCCCGGCATATCCCCCCTAATAGTACCAACCCTCCCCAATTACCCAG ACCCGGTAGACCGGATAAACCCGCCCGGATCCCCCCCGCCCCCCGTTCCGGGGATGGCGT GCGCTCTCCGTTACCCAATCGCCCCCGCCCGTTGCTTCCCGCCCACAACAATTTGCGCGT CGCGCCCGTACGCCCTCCCCAAACCCACCCCCCCATCAACACCCACTTATACACAATATC CCCGCATACTTACCCCTCTTCCGTTACTGCCCCCCCCCCGCGGTGCCCCGCCCTCTCCGC GCGTAAATTTTCCCCCCCATATTATCATTTCGACCCGCACCCCGCCGACGCCATCATTAT CCCCCCGGATATCTAAATTCCCCCCGTTTCCCGTGGCGTAGACGCCCGCGCGATAATCCT ACCCACCCATTATCCCCCGTTTCCCCGCCCCCCGATATTTTCTATCGCTACGTATCACCC CANTCTCGTCAAACAGTATTCGCCGTCGCACACATCACCCCCCCCCGACACGTTATTCCT CCCCCGCCGCAACAGACA |
| GenBank Accession | AL766597 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19630032 - go to primer design |
| BLAST e Value | 1e-25 |
| Hit Clone Code (BAC ID) | T9J23 |
| Hit Gene Code | At2g47970 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Nuclear pore localization protein NPL4 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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