SimpleSearch - Line and FST details


Line specific information

 
Line ID 213C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N420380)
Segregation Analysis 50:39:36
Confirmed for Hit At2g17420
Parent of DUPLO pair 11770
Parent of pair(s) none

Gene hit At4g39050

 
Sequence (A. th genome BLAST matches underlined) 
>27-K014138-022-213-C04-8409
NTGATCCATGGTAGATTTCCGGGACTGAAGCCATTTACATGTAGCTCTATAGGATCTCTT
CTTATAGATGAGTTTACAACTACCCAATTTATGTGTAAAAATTAATAATGGAGGATATTT
GGAAAGGCACAAAAAAAAGAAACAAAATTCAAAATCTGAAATTTCTCAGCCTCCTCGTTT
CTTCACCCAGAGGAGAGAGAAATCTGAGGAATTCGATCTTCGCTTAAAGAAGACGAAACA
ATCTCTCTCTCTTTCTCTCTTCAATGGTCTCACCATCTATGACTACCATCTCCTATGGGA
TCCTCCCTATAGTGAGNNG
GenBank Accession AL766727 [GenBank]
Graphic View Graphic view of gene At4g39050
Predicted Position of Insertion Chr4:18193045 - go to primer design
BLAST e Value 2e-55
Hit Clone Code (BAC ID) F19H22
Hit Gene Code At4g39050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Kinesin motor family protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At2g17420

 
Sequence (A. th genome BLAST matches underlined) 
>27-K014134-022-213-C04-8409
NATGGATCCATGTAGATTNTCCCGCACATGAAGCCCTTTACATTTGAATATACCGCATCG
GNCGCCATTCGCCATTCAAATCCGCCGTCTCTATGGGATCCTCCCTATAGTGAGATTGGN
AGTTTGAGATATAGACACCCTTCTTTTAGCGTGCTTTTCTCTTAAATATTTTTGGAAATT
GCCAAATTATATGACCAAGCGCATTATTATATACATGGTTTAGAATA
GenBank Accession FR805852 [GenBank]
Graphic View Graphic view of gene At2g17420
Predicted Position of Insertion Chr2:7564398 - go to primer design
BLAST e Value 5e-10
Hit Clone Code (BAC ID) F5J6
Hit Gene Code At2g17420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NADPH-dependent thioredoxin reductase A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37