SimpleSearch - Line and FST details


Line specific information

 
Line ID 214F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N420509)
Segregation Analysis 50:38:16
Confirmed for Hit At2g31810
Parent of DUPLO pair 2499
Parent of pair(s) none
Note

Gene hit At2g31810

 
Sequence (A. th genome BLAST matches underlined) 
>06-K014139-022-214-F01-8409
NTTTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGATATCTGTTAGCAT
TGGGATCCTCTCTATAGATGAGAATTCTGTTAATATAGTTACATAAATGATAAATCAATT
GAGTGTTAGATTTGGAGACTGTATGTATTTACTTACAAAGCAGACATTGAAAGAGTTGGG
GTTTTCTTTAAGCTATTTCGTTTTATTTATCACAGTTATTCTTTTTTGATCTTTCAGACG
AGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAAT
ATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAGGCATAGTCCTTATCTCTC
TCATACACGCACACACAGTGTGCTTAGGTTTACTGACACACTGAAAGATCTCCTTTCTTT
TAGAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATA
CCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTG
GATGAGGGGGGATTACCAAAAGCTACTGGCTTTCTTATAATTTAACAGTTTGAATGTCTT
GGAGGGCCCTATCATTCTTTTG
GenBank Accession AL766891 [GenBank]
Graphic View Graphic view of gene At2g31810
Predicted Position of Insertion Chr2:13526617 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F20M17
Hit Gene Code At2g31810 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ACT domain-containing small subunit of acetolactate synthase protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g20900

 
Sequence (A. th genome BLAST matches underlined) 
>06-K014143-022-214-F01-8409
AAATGGATCCATGTAGATCTTCCCGTGACATGAAGCACTATCCAAGAAGTCAAAACTCAT
GATTTTGAGGAAACATTATCTAAAGCATTAAGGTGTGATCGGCTACGCAAGCCGACACTA
ATATAGAAACAGACCAGAGAACAGAACTAATTTAAAGACGAAGCATAAGATATAAAAAAG
GTGACTTATGTTAAATGATCTCTCTCATGAAAGGTAAGAGGAAACCCTATGGGATCCTCC
CTATAGGGAGAACCGTCTCCTTCCCTATAAAAAGATAGCATATGATTTTGAA
GenBank Accession AL766892 [GenBank]
Graphic View Graphic view of gene At1g20900
Predicted Position of Insertion Chr1:7272881 - go to primer design
BLAST e Value 3e-76
Hit Clone Code (BAC ID) F9H16
Hit Gene Code At1g20900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Putative AT-hook DNA-binding family protein
Insertion Classification TS2TE (5')
Confirmation Status failed, line belongs to a contamination group, please check line 214G02


Last Updated on 10.06.2021 13:37