SimpleSearch - Line and FST details


Line specific information

 
Line ID 215E12
Vector Used pAC161
Line Availability available as T3 set from NASC (N420604)
Segregation Analysis 50:24:15
Confirmed for Hit At5g16970
Parent of DUPLO pair none
Parent of pair(s) 3811, 8287, 9792, 69702, 69703, 69704, 69705, 69706, 69707, 69708, 69709, 69710, 69713, 69718, 69719, 69720, 69721, 69722, 69723, 69724, 69725, 69726, 69728, 69735, 69742, 69743, 69744, 69745, 69746, 69747

Gene hit F24O1

 
Sequence (A. th genome BLAST matches underlined) 
>93-K014140-022-215-E12-8409
GGTATGGAGTGGCTATGGGATCCTCCCTATAGTGAGAACTATTTTTGTTTTTGACAGCTA
TGGGATCCTCCCTATAATGAGAGATGGCACACTCCTATCTAATTACACACAAGGATATGG
ATACTCGAAGAACTTAACTACCCAACGTGGTTGGACTGTTGGTAATATTATCCAATCCAC
TGTATAGCGAGTGACCCAGTACTCCGATGCTTCCTGCGCACTGTTAGTCGAAATAGGGCT
ACAAGATGCTCTTGATTATGCGATCATGCATATCAGAAGACCGCGCGCCCAGTATTTTTC
CCCTTCGGATACCCGCCCCTCGGTTTATATCCCCCCCCATAGATTTTTCTCAAGCCA
GenBank Accession AL767013 [GenBank]
Graphic View Graphic view of sequence AL767013 of line 215E12
Predicted Position of Insertion Chr1:23046302 - go to primer design
BLAST e Value 4e-04
Hit Clone Code (BAC ID) F24O1
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g16970

 
Sequence (A. th genome BLAST matches underlined) 
>63-K108745-0022-215-E12C-8409
TTTTTTTGCTTGTCATCGTGTTGACTGTTGTTGTTGCCGTTGTGTGTTTTGGTCTATTCA
ATCCAAGGGTATGGAGTGTCTAGAATAATAGAATCTGGACATCCAGATTACAAGAAAGGA
GATTTACTCTGGGGTATAGTTGCATGGGAGGAGTACAGTGTTATCACTCCAATGACTCAC
GCGCATTTCAAGATCCAACATACTGATGTTCCATTATCTTATTACACTGGACTTTTAGGT
ATGTTAATCTCAACCTTTTTCATAGTTTTGTAAGGTGGAATCACTTTGTAAAATTTTGGA
AATCTGCTTCTTGATGATACAATGTTTTGACTTGAGACAGTGAGGTCATAACCTTTATTA
TGGATTTCTAAAAAATCTTAGAAACATATGAATGGAATTGGTTATAACTTCAGTCTAGGG
TTTCAACTGTTTTGTTTGTTGATCTATTTCATATATTCACTCTTTGATGGGTTTTTGTCT
TGTCCTAATAGGTATGCCTGGTATGACTGCCTATGCTGGGTTTTATGAAGTTTGTTCTCC
AAA
GenBank Accession HE664357 [GenBank]
Graphic View Graphic view of gene At5g16970
Predicted Position of Insertion Chr5:5577638 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F2K13
Hit Gene Code At5g16970 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alkenal reductase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL767014 [GenBank]


Last Updated on 10.06.2021 13:37